Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42741623-43147667

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20646 1 42694925 to 42744791 49866 + sense overlapping lncRNA gene predicted gene 20646
Gm46090 1 42738847 to 42744791 5944 + lncRNA gene predicted gene, 46090
Dalir 1 42750712 to 42752881 2169 + lincRNA gene DNMT1 associated long intergenic non-coding RNA
Gm46091 1 42762307 to 42774147 11840 + lncRNA gene predicted gene, 46091
Cpgi209 1 42780500 to 42780667 167 CpG island CpG island 209
Cpgi210 1 42850970 to 42851892 922 CpG island CpG island 210
Mrps9 1 42851233 to 42905683 54450 + protein coding gene mitochondrial ribosomal protein S9
Tssr6517 1 42851253 to 42851295 42 + TSS region transcription start site region 6517
Gm23126 1 42866685 to 42866818 133 - snoRNA gene predicted gene, 23126
Gm39633 1 42936623 to 42952667 16044 - lncRNA gene predicted gene, 39633
Cpgi211 1 42952739 to 42953784 1045 CpG island CpG island 211
Gpr45 1 42952872 to 43035451 82579 + protein coding gene G protein-coupled receptor 45
Tssr6518 1 42952949 to 42952983 34 + TSS region transcription start site region 6518
Tssr6519 1 42952984 to 42953028 44 + TSS region transcription start site region 6519
Tssr6520 1 42953106 to 42953164 58 + TSS region transcription start site region 6520
Tssr6521 1 42954135 to 42954141 6 + TSS region transcription start site region 6521
Gm3418 1 42998978 to 42999477 499 - pseudogene predicted gene 3418
V125Dq1 1 43000000 to 43000000 0 QTL vitamin D active form serum level QTL 1
Cpgi212 1 43032270 to 43033111 841 CpG island CpG island 212
Gm24001 1 43036845 to 43036929 84 + miRNA gene predicted gene, 24001
Tgfbrap1 1 43047265 to 43098637 51372 - protein coding gene transforming growth factor, beta receptor associated protein 1
Gm28782 1 43056267 to 43057134 867 + antisense lncRNA gene predicted gene 28782
Cpgi213 1 43091656 to 43092998 1342 CpG island CpG island 213
Tssr11467 1 43092438 to 43092498 60 - TSS region transcription start site region 11467
8430432A02Rik 1 43092588 to 43093835 1247 + antisense lncRNA gene RIKEN cDNA 8430432A02 gene
Cpgi214 1 43098348 to 43099059 711 CpG island CpG island 214
Tssr11468 1 43098625 to 43098686 61 - TSS region transcription start site region 11468
Tssr68 1 43098692 to 43098711 19 + TSS region transcription start site region 68
AI597479 1 43098710 to 43115946 17236 + protein coding gene expressed sequence AI597479
Tssr6522 1 43098712 to 43098760 48 + TSS region transcription start site region 6522
D1Mit477 1 43119939 to 43120045 106 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 477
Fhl2 1 43123074 to 43196984 73910 - protein coding gene four and a half LIM domains 2
Cpgi215 1 43123472 to 43123981 509 CpG island CpG island 215
Tssr11469 1 43141855 to 43141872 17 - TSS region transcription start site region 11469
Tssr11470 1 43145561 to 43145569 8 - TSS region transcription start site region 11470