Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42701233-43055683

29 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm20646	1	42694925 to 42744791	49866	+	sense overlapping lncRNA gene	predicted gene 20646
2900092D14Rik	1	42700336 to 42703176	2840	+	lncRNA gene	RIKEN cDNA 2900092D14 gene
D1Mit246	1	42704071 to 42704217	146		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 246
Pantr2	1	42707061 to 42713454	6393	-	lncRNA gene	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
Tssr11464	1	42711339 to 42711342	3	-	TSS region	transcription start site region 11464
Cpgi207	1	42713196 to 42713834	638		CpG island	CpG island 207
Tssr11465	1	42713686 to 42713698	12	-	TSS region	transcription start site region 11465
Tssr11466	1	42713749 to 42713755	6	-	TSS region	transcription start site region 11466
Cpgi208	1	42714386 to 42714582	196		CpG island	CpG island 208
Gm46090	1	42738847 to 42744791	5944	+	lncRNA gene	predicted gene, 46090
Dalir	1	42750712 to 42752881	2169	+	lincRNA gene	DNMT1 associated long intergenic non-coding RNA
Gm46091	1	42762307 to 42774147	11840	+	lncRNA gene	predicted gene, 46091
Cpgi209	1	42780500 to 42780667	167		CpG island	CpG island 209
Cpgi210	1	42850970 to 42851892	922		CpG island	CpG island 210
Mrps9	1	42851233 to 42905683	54450	+	protein coding gene	mitochondrial ribosomal protein S9
Tssr6517	1	42851253 to 42851295	42	+	TSS region	transcription start site region 6517
Gm23126	1	42866685 to 42866818	133	-	snoRNA gene	predicted gene, 23126
Gm39633	1	42936623 to 42952667	16044	-	lncRNA gene	predicted gene, 39633
Cpgi211	1	42952739 to 42953784	1045		CpG island	CpG island 211
Gpr45	1	42952872 to 43035451	82579	+	protein coding gene	G protein-coupled receptor 45
Tssr6518	1	42952949 to 42952983	34	+	TSS region	transcription start site region 6518
Tssr6519	1	42952984 to 42953028	44	+	TSS region	transcription start site region 6519
Tssr6520	1	42953106 to 42953164	58	+	TSS region	transcription start site region 6520
Tssr6521	1	42954135 to 42954141	6	+	TSS region	transcription start site region 6521
Gm3418	1	42998978 to 42999477	499	-	pseudogene	predicted gene 3418
V125Dq1	1	43000000 to 43000000	0		QTL	vitamin D active form serum level QTL 1
Cpgi212	1	43032270 to 43033111	841		CpG island	CpG island 212
Gm24001	1	43036845 to 43036929	84	+	miRNA gene	predicted gene, 24001
Tgfbrap1	1	43047265 to 43098637	51372	-	protein coding gene	transforming growth factor, beta receptor associated protein 1