Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42687146-42710210

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pantr1 1 42648200 to 42694825 46625 - lincRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Gm42411 1 42682365 to 42696565 14200 + lncRNA gene predicted gene 42411
Tssr11456 1 42693100 to 42693111 11 - TSS region transcription start site region 11456
Tssr11457 1 42693117 to 42693137 20 - TSS region transcription start site region 11457
Tssr11458 1 42693147 to 42693158 11 - TSS region transcription start site region 11458
Cpgi205 1 42693925 to 42695286 1361 CpG island CpG island 205
Tssr6508 1 42694095 to 42694101 6 + TSS region transcription start site region 6508
Tssr11459 1 42694813 to 42694877 64 - TSS region transcription start site region 11459
Tssr6509 1 42694893 to 42694942 49 + TSS region transcription start site region 6509
Gm20646 1 42694925 to 42744791 49866 + sense overlapping lncRNA gene predicted gene 20646
Tssr11460 1 42694948 to 42695014 66 - TSS region transcription start site region 11460
Tssr6510 1 42694948 to 42694982 34 + TSS region transcription start site region 6510
Tssr11461 1 42695191 to 42695204 13 - TSS region transcription start site region 11461
Tssr11462 1 42695279 to 42695290 11 - TSS region transcription start site region 11462
Tssr11463 1 42695412 to 42695457 45 - TSS region transcription start site region 11463
Cpgi206 1 42695518 to 42699208 3690 CpG island CpG island 206
D1Mit228.1 1 42695599 to 42695734 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228.1
Tssr6511 1 42695714 to 42695721 7 + TSS region transcription start site region 6511
Tssr6512 1 42695729 to 42695776 47 + TSS region transcription start site region 6512
Tssr6513 1 42695809 to 42695820 11 + TSS region transcription start site region 6513
D1Mit228 1 42695810 to 42695938 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228
Pou3f3 1 42697146 to 42700210 3064 + protein coding gene POU domain, class 3, transcription factor 3
Tssr6514 1 42699641 to 42699652 11 + TSS region transcription start site region 6514
Tssr6515 1 42699662 to 42699681 19 + TSS region transcription start site region 6515
2900092D14Rik 1 42700336 to 42703176 2840 + lncRNA gene RIKEN cDNA 2900092D14 gene
Tssr6516 1 42701165 to 42701169 4 + TSS region transcription start site region 6516
D1Mit246 1 42704071 to 42704217 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 246
Pantr2 1 42707061 to 42713454 6393 - lncRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2