Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42680500-42880667

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pantr1	1	42648200 to 42694825	46625	-	lincRNA gene	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Tssr11455	1	42681432 to 42681435	3	-	TSS region	transcription start site region 11455
Gm42411	1	42682365 to 42696565	14200	+	lncRNA gene	predicted gene 42411
Cpgi203	1	42684253 to 42685140	887		CpG island	CpG island 203
Cpgi204	1	42686176 to 42687005	829		CpG island	CpG island 204
Tssr11456	1	42693100 to 42693111	11	-	TSS region	transcription start site region 11456
Tssr11457	1	42693117 to 42693137	20	-	TSS region	transcription start site region 11457
Tssr11458	1	42693147 to 42693158	11	-	TSS region	transcription start site region 11458
Cpgi205	1	42693925 to 42695286	1361		CpG island	CpG island 205
Tssr6508	1	42694095 to 42694101	6	+	TSS region	transcription start site region 6508
Tssr11459	1	42694813 to 42694877	64	-	TSS region	transcription start site region 11459
Tssr6509	1	42694893 to 42694942	49	+	TSS region	transcription start site region 6509
Gm20646	1	42694925 to 42744791	49866	+	sense overlapping lncRNA gene	predicted gene 20646
Tssr11460	1	42694948 to 42695014	66	-	TSS region	transcription start site region 11460
Tssr6510	1	42694948 to 42694982	34	+	TSS region	transcription start site region 6510
Tssr11461	1	42695191 to 42695204	13	-	TSS region	transcription start site region 11461
Tssr11462	1	42695279 to 42695290	11	-	TSS region	transcription start site region 11462
Tssr11463	1	42695412 to 42695457	45	-	TSS region	transcription start site region 11463
Cpgi206	1	42695518 to 42699208	3690		CpG island	CpG island 206
D1Mit228.1	1	42695599 to 42695734	135		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 228.1
Tssr6511	1	42695714 to 42695721	7	+	TSS region	transcription start site region 6511
Tssr6512	1	42695729 to 42695776	47	+	TSS region	transcription start site region 6512
Tssr6513	1	42695809 to 42695820	11	+	TSS region	transcription start site region 6513
D1Mit228	1	42695810 to 42695938	128		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 228
Pou3f3	1	42697146 to 42700210	3064	+	protein coding gene	POU domain, class 3, transcription factor 3
Tssr6514	1	42699641 to 42699652	11	+	TSS region	transcription start site region 6514
Tssr6515	1	42699662 to 42699681	19	+	TSS region	transcription start site region 6515
2900092D14Rik	1	42700336 to 42703176	2840	+	lncRNA gene	RIKEN cDNA 2900092D14 gene
Tssr6516	1	42701165 to 42701169	4	+	TSS region	transcription start site region 6516
D1Mit246	1	42704071 to 42704217	146		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 246
Pantr2	1	42707061 to 42713454	6393	-	lncRNA gene	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
Tssr11464	1	42711339 to 42711342	3	-	TSS region	transcription start site region 11464
Cpgi207	1	42713196 to 42713834	638		CpG island	CpG island 207
Tssr11465	1	42713686 to 42713698	12	-	TSS region	transcription start site region 11465
Tssr11466	1	42713749 to 42713755	6	-	TSS region	transcription start site region 11466
Cpgi208	1	42714386 to 42714582	196		CpG island	CpG island 208
Gm46090	1	42738847 to 42744791	5944	+	lncRNA gene	predicted gene, 46090
Dalir	1	42750712 to 42752881	2169	+	lincRNA gene	DNMT1 associated long intergenic non-coding RNA
Gm46091	1	42762307 to 42774147	11840	+	lncRNA gene	predicted gene, 46091
Cpgi209	1	42780500 to 42780667	167		CpG island	CpG island 209
Cpgi210	1	42850970 to 42851892	922		CpG island	CpG island 210
Mrps9	1	42851233 to 42905683	54450	+	protein coding gene	mitochondrial ribosomal protein S9
Tssr6517	1	42851253 to 42851295	42	+	TSS region	transcription start site region 6517
Gm23126	1	42866685 to 42866818	133	-	snoRNA gene	predicted gene, 23126