Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:42659939-43580045

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pantr1 1 42648200 to 42694825 46625 - lincRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Tssr11453 1 42665076 to 42665086 10 - TSS region transcription start site region 11453
Tssr11454 1 42667638 to 42667673 35 - TSS region transcription start site region 11454
Tssr67 1 42672789 to 42672815 26 + TSS region transcription start site region 67
Tssr11455 1 42681432 to 42681435 3 - TSS region transcription start site region 11455
Gm42411 1 42682365 to 42696565 14200 + lncRNA gene predicted gene 42411
Cpgi203 1 42684253 to 42685140 887 CpG island CpG island 203
Cpgi204 1 42686176 to 42687005 829 CpG island CpG island 204
Tssr11456 1 42693100 to 42693111 11 - TSS region transcription start site region 11456
Tssr11457 1 42693117 to 42693137 20 - TSS region transcription start site region 11457
Tssr11458 1 42693147 to 42693158 11 - TSS region transcription start site region 11458
Cpgi205 1 42693925 to 42695286 1361 CpG island CpG island 205
Tssr6508 1 42694095 to 42694101 6 + TSS region transcription start site region 6508
Tssr11459 1 42694813 to 42694877 64 - TSS region transcription start site region 11459
Tssr6509 1 42694893 to 42694942 49 + TSS region transcription start site region 6509
Gm20646 1 42694925 to 42744791 49866 + sense overlapping lncRNA gene predicted gene 20646
Tssr6510 1 42694948 to 42694982 34 + TSS region transcription start site region 6510
Tssr11460 1 42694948 to 42695014 66 - TSS region transcription start site region 11460
Tssr11461 1 42695191 to 42695204 13 - TSS region transcription start site region 11461
Tssr11462 1 42695279 to 42695290 11 - TSS region transcription start site region 11462
Tssr11463 1 42695412 to 42695457 45 - TSS region transcription start site region 11463
Cpgi206 1 42695518 to 42699208 3690 CpG island CpG island 206
D1Mit228.1 1 42695599 to 42695734 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228.1
Tssr6511 1 42695714 to 42695721 7 + TSS region transcription start site region 6511
Tssr6512 1 42695729 to 42695776 47 + TSS region transcription start site region 6512
Tssr6513 1 42695809 to 42695820 11 + TSS region transcription start site region 6513
D1Mit228 1 42695810 to 42695938 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228
Pou3f3 1 42697146 to 42700210 3064 + protein coding gene POU domain, class 3, transcription factor 3
Tssr6514 1 42699641 to 42699652 11 + TSS region transcription start site region 6514
Tssr6515 1 42699662 to 42699681 19 + TSS region transcription start site region 6515
2900092D14Rik 1 42700336 to 42703176 2840 + lncRNA gene RIKEN cDNA 2900092D14 gene
Tssr6516 1 42701165 to 42701169 4 + TSS region transcription start site region 6516
D1Mit246 1 42704071 to 42704217 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 246
Pantr2 1 42707061 to 42713454 6393 - lncRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
Tssr11464 1 42711339 to 42711342 3 - TSS region transcription start site region 11464
Cpgi207 1 42713196 to 42713834 638 CpG island CpG island 207
Tssr11465 1 42713686 to 42713698 12 - TSS region transcription start site region 11465
Tssr11466 1 42713749 to 42713755 6 - TSS region transcription start site region 11466
Cpgi208 1 42714386 to 42714582 196 CpG island CpG island 208
Gm46090 1 42738847 to 42744791 5944 + lncRNA gene predicted gene, 46090
Dalir 1 42750712 to 42752881 2169 + lincRNA gene DNMT1 associated long intergenic non-coding RNA
Gm46091 1 42762307 to 42774147 11840 + lncRNA gene predicted gene, 46091
Cpgi209 1 42780500 to 42780667 167 CpG island CpG island 209
Cpgi210 1 42850970 to 42851892 922 CpG island CpG island 210
Mrps9 1 42851233 to 42905683 54450 + protein coding gene mitochondrial ribosomal protein S9
Tssr6517 1 42851253 to 42851295 42 + TSS region transcription start site region 6517
Gm23126 1 42866685 to 42866818 133 - snoRNA gene predicted gene, 23126
Gm39633 1 42936623 to 42952667 16044 - lncRNA gene predicted gene, 39633
Cpgi211 1 42952739 to 42953784 1045 CpG island CpG island 211
Gpr45 1 42952872 to 43035451 82579 + protein coding gene G protein-coupled receptor 45
Tssr6518 1 42952949 to 42952983 34 + TSS region transcription start site region 6518
Tssr6519 1 42952984 to 42953028 44 + TSS region transcription start site region 6519
Tssr6520 1 42953106 to 42953164 58 + TSS region transcription start site region 6520
Tssr6521 1 42954135 to 42954141 6 + TSS region transcription start site region 6521
Gm3418 1 42998978 to 42999477 499 - pseudogene predicted gene 3418
V125Dq1 1 43000000 to 43000000 0 QTL vitamin D active form serum level QTL 1
Cpgi212 1 43032270 to 43033111 841 CpG island CpG island 212
Gm24001 1 43036845 to 43036929 84 + miRNA gene predicted gene, 24001
Tgfbrap1 1 43047265 to 43098637 51372 - protein coding gene transforming growth factor, beta receptor associated protein 1
Gm28782 1 43056267 to 43057134 867 + antisense lncRNA gene predicted gene 28782
Cpgi213 1 43091656 to 43092998 1342 CpG island CpG island 213
Tssr11467 1 43092438 to 43092498 60 - TSS region transcription start site region 11467
8430432A02Rik 1 43092588 to 43093835 1247 + antisense lncRNA gene RIKEN cDNA 8430432A02 gene
Cpgi214 1 43098348 to 43099059 711 CpG island CpG island 214
Tssr11468 1 43098625 to 43098686 61 - TSS region transcription start site region 11468
Tssr68 1 43098692 to 43098711 19 + TSS region transcription start site region 68
AI597479 1 43098710 to 43115946 17236 + protein coding gene expressed sequence AI597479
Tssr6522 1 43098712 to 43098760 48 + TSS region transcription start site region 6522
D1Mit477 1 43119939 to 43120045 106 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 477
Fhl2 1 43123074 to 43196984 73910 - protein coding gene four and a half LIM domains 2
Cpgi215 1 43123472 to 43123981 509 CpG island CpG island 215
Tssr11469 1 43141855 to 43141872 17 - TSS region transcription start site region 11469
Tssr11470 1 43145561 to 43145569 8 - TSS region transcription start site region 11470
Tssr11471 1 43159186 to 43159192 6 - TSS region transcription start site region 11471
Tssr11472 1 43160080 to 43160089 9 - TSS region transcription start site region 11472
Tssr11473 1 43162001 to 43162012 11 - TSS region transcription start site region 11473
Cpgi216 1 43163480 to 43164405 925 CpG island CpG island 216
Tssr11474 1 43163821 to 43163832 11 - TSS region transcription start site region 11474
Tssr11475 1 43163847 to 43163861 14 - TSS region transcription start site region 11475
Tssr11476 1 43163874 to 43163890 16 - TSS region transcription start site region 11476
Tssr11477 1 43163891 to 43163962 71 - TSS region transcription start site region 11477
Tssr11478 1 43164077 to 43164099 22 - TSS region transcription start site region 11478
Tssr11479 1 43170565 to 43170570 5 - TSS region transcription start site region 11479
Tssr11480 1 43183631 to 43183658 27 - TSS region transcription start site region 11480
Tssr11481 1 43183767 to 43183794 27 - TSS region transcription start site region 11481
Tssr11482 1 43183810 to 43183835 25 - TSS region transcription start site region 11482
Tssr11483 1 43183920 to 43183933 13 - TSS region transcription start site region 11483
Tssr11484 1 43186081 to 43186089 8 - TSS region transcription start site region 11484
Tssr11485 1 43186150 to 43186159 9 - TSS region transcription start site region 11485
Tssr11486 1 43186174 to 43186188 14 - TSS region transcription start site region 11486
Tssr11487 1 43186278 to 43186298 20 - TSS region transcription start site region 11487
Tssr11488 1 43186300 to 43186311 11 - TSS region transcription start site region 11488
Tssr11489 1 43186467 to 43186470 3 - TSS region transcription start site region 11489
Tssr11490 1 43186784 to 43186792 8 - TSS region transcription start site region 11490
Tssr11491 1 43187087 to 43187097 10 - TSS region transcription start site region 11491
Tssr11492 1 43187275 to 43187296 21 - TSS region transcription start site region 11492
Tssr11493 1 43187334 to 43187340 6 - TSS region transcription start site region 11493
Tssr6523 1 43189100 to 43189115 15 + TSS region transcription start site region 6523
Gm8210 1 43189156 to 43189638 482 + pseudogene predicted pseudogene 8210
Tssr11494 1 43196754 to 43196768 14 - TSS region transcription start site region 11494
Tssr6524 1 43196994 to 43197010 16 + TSS region transcription start site region 6524
Tssr6525 1 43197121 to 43197128 7 + TSS region transcription start site region 6525
Tssr11495 1 43198335 to 43198342 7 - TSS region transcription start site region 11495
Tssr6526 1 43204852 to 43204854 2 + TSS region transcription start site region 6526
Gm29040 1 43250156 to 43302925 52769 - lincRNA gene predicted gene 29040
Gm29610 1 43270683 to 43271135 452 + pseudogene predicted gene 29610
Tssr11496 1 43310898 to 43310909 11 - TSS region transcription start site region 11496
Tssr69 1 43310919 to 43310920 1 - TSS region transcription start site region 69
D1Mit213 1 43331416 to 43331523 107 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 213
Tssr11497 1 43397317 to 43397325 8 - TSS region transcription start site region 11497
Gm29041 1 43409584 to 43409963 379 + pseudogene predicted gene 29041
Tssr6527 1 43410946 to 43410949 3 + TSS region transcription start site region 6527
D1Mit375 1 43444015 to 43444137 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 375
Cpgi217 1 43445210 to 43446811 1601 CpG island CpG island 217
Tssr6528 1 43445714 to 43445722 8 + TSS region transcription start site region 6528
Tssr6529 1 43445736 to 43445830 94 + TSS region transcription start site region 6529
Nck2 1 43445751 to 43570518 124767 + protein coding gene non-catalytic region of tyrosine kinase adaptor protein 2
Tssr11498 1 43447153 to 43447164 11 - TSS region transcription start site region 11498
Tssr6530 1 43447215 to 43447219 4 + TSS region transcription start site region 6530
Tssr6531 1 43447346 to 43447355 9 + TSS region transcription start site region 6531
Tssr6532 1 43451064 to 43451098 34 + TSS region transcription start site region 6532
Tssr6533 1 43457248 to 43457282 34 + TSS region transcription start site region 6533
Tssr6534 1 43457302 to 43457315 13 + TSS region transcription start site region 6534
Gm37536 1 43488447 to 43490937 2490 + unclassified gene predicted gene, 37536
Tssr6535 1 43494769 to 43494771 2 + TSS region transcription start site region 6535
D1Mit248 1 43495356 to 43495496 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 248
Tssr11499 1 43502846 to 43502850 4 - TSS region transcription start site region 11499
Tssr6536 1 43503237 to 43503243 6 + TSS region transcription start site region 6536
Tssr11500 1 43521845 to 43521850 5 - TSS region transcription start site region 11500
Tssr11501 1 43522027 to 43522068 41 - TSS region transcription start site region 11501
Tssr6537 1 43522301 to 43522309 8 + TSS region transcription start site region 6537
Tssr6538 1 43532225 to 43532235 10 + TSS region transcription start site region 6538
Tssr6539 1 43532372 to 43532387 15 + TSS region transcription start site region 6539
Tssr6540 1 43537283 to 43537297 14 + TSS region transcription start site region 6540
Tssr11502 1 43542425 to 43542435 10 - TSS region transcription start site region 11502
Tssr6541 1 43542508 to 43542549 41 + TSS region transcription start site region 6541
Tssr6542 1 43544884 to 43544908 24 + TSS region transcription start site region 6542
Cpgi218 1 43553985 to 43554253 268 CpG island CpG island 218
Gm38228 1 43560273 to 43561565 1292 + unclassified gene predicted gene, 38228
Tssr6543 1 43561371 to 43561379 8 + TSS region transcription start site region 6543