Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:40717587-41631252

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22 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc9a2 1 40681712 to 40768885 87173 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 2
Tssr6501 1 40720679 to 40720685 6 + TSS region transcription start site region 6501
Cpgi198 1 40767766 to 40767945 179 CpG island CpG island 198
Tssr6502 1 40771374 to 40771402 28 + TSS region transcription start site region 6502
Gm37915 1 40771385 to 40785343 13958 + antisense lncRNA gene predicted gene, 37915
Mfsd9 1 40772040 to 40790657 18617 - protein coding gene major facilitator superfamily domain containing 9
Cpgi199 1 40790435 to 40791001 566 CpG island CpG island 199
Tssr11448 1 40790642 to 40790686 44 - TSS region transcription start site region 11448
Tssr6503 1 40805578 to 40805692 114 + TSS region transcription start site region 6503
Tmem182 1 40805601 to 40856887 51286 + protein coding gene transmembrane protein 182
Pwgrq11 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 11
Pwgrq9 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 9
Pwgrq10 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 10
Gm5973 1 40863737 to 40864232 495 - pseudogene predicted gene 5973
4930448I06Rik 1 41167587 to 41181252 13665 - lincRNA gene RIKEN cDNA 4930448I06 gene
D1Mit247 1 41173577 to 41173704 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 247
Gm39631 1 41495622 to 41533313 37691 - lncRNA gene predicted gene, 39631
D1Mit173 1 41503591 to 41503736 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 173
D1Mit173.1 1 41503660 to 41503818 158 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 173.1
Gm28634 1 41526931 to 41529543 2612 - lincRNA gene predicted gene 28634
Tssr11449 1 41533307 to 41533314 7 - TSS region transcription start site region 11449
Gm35935 1 41570307 to 41573501 3194 - lncRNA gene predicted gene, 35935