Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:40583729-42903741

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc9a4 1 40580081 to 40630725 50644 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 4
Gm37435 1 40582895 to 40586841 3946 - unclassified gene predicted gene, 37435
Tssr6493 1 40600913 to 40600949 36 + TSS region transcription start site region 6493
Tssr6494 1 40606255 to 40606261 6 + TSS region transcription start site region 6494
Tssr6495 1 40606319 to 40606330 11 + TSS region transcription start site region 6495
Cpgi197 1 40680625 to 40682378 1753 CpG island CpG island 197
Tssr6496 1 40681361 to 40681380 19 + TSS region transcription start site region 6496
Tssr6497 1 40681571 to 40681606 35 + TSS region transcription start site region 6497
Tssr6498 1 40681608 to 40681644 36 + TSS region transcription start site region 6498
Tssr6499 1 40681659 to 40681666 7 + TSS region transcription start site region 6499
Slc9a2 1 40681712 to 40768885 87173 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 2
Tssr6500 1 40684074 to 40684077 3 + TSS region transcription start site region 6500
Gm37623 1 40691442 to 40697636 6194 - antisense lncRNA gene predicted gene, 37623
D1Mit172 1 40712756 to 40712897 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 172
Tssr6501 1 40720679 to 40720685 6 + TSS region transcription start site region 6501
Cpgi198 1 40767766 to 40767945 179 CpG island CpG island 198
Tssr6502 1 40771374 to 40771402 28 + TSS region transcription start site region 6502
Gm37915 1 40771385 to 40785343 13958 + antisense lncRNA gene predicted gene, 37915
Mfsd9 1 40772040 to 40790657 18617 - protein coding gene major facilitator superfamily domain containing 9
Cpgi199 1 40790435 to 40791001 566 CpG island CpG island 199
Tssr11448 1 40790642 to 40790686 44 - TSS region transcription start site region 11448
Tssr6503 1 40805578 to 40805692 114 + TSS region transcription start site region 6503
Tmem182 1 40805601 to 40856887 51286 + protein coding gene transmembrane protein 182
Pwgrq9 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 9
Pwgrq11 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 11
Pwgrq10 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 10
Gm5973 1 40863737 to 40864232 495 - pseudogene predicted gene 5973
4930448I06Rik 1 41167587 to 41181252 13665 - lincRNA gene RIKEN cDNA 4930448I06 gene
D1Mit247 1 41173577 to 41173704 127 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 247
Gm39631 1 41495622 to 41533313 37691 - lncRNA gene predicted gene, 39631
D1Mit173 1 41503591 to 41503736 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 173
D1Mit173.1 1 41503660 to 41503818 158 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 173.1
Gm28634 1 41526931 to 41529543 2612 - lincRNA gene predicted gene 28634
Tssr11449 1 41533307 to 41533314 7 - TSS region transcription start site region 11449
Gm35935 1 41570307 to 41573501 3194 - lncRNA gene predicted gene, 35935
Tssr66 1 41743569 to 41743588 19 + TSS region transcription start site region 66
Tssr6504 1 41743676 to 41743698 22 + TSS region transcription start site region 6504
Tssr6505 1 41743729 to 41743741 12 + TSS region transcription start site region 6505
D1Ertd84e 1 41752887 to 41753086 199 DNA segment DNA segment, Chr 1, ERATO Doi 84, expressed
Gm29260 1 41781808 to 41939560 157752 + lincRNA gene predicted gene 29260
D1Mit476 1 41877291 to 41877509 218 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 476
D1Mit1013 1 42007286 to 42007434 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1013
Gm5267 1 42103289 to 42104333 1044 + pseudogene predicted gene 5267
Gm8176 1 42179290 to 42180388 1098 - pseudogene predicted gene 8176
Gm9915 1 42229726 to 42231108 1382 + lincRNA gene predicted gene 9915
Gm29664 1 42238233 to 42238695 462 - lincRNA gene predicted gene 29664
Tssr6506 1 42259803 to 42259810 7 + TSS region transcription start site region 6506
Gm28175 1 42261855 to 42304412 42557 + lincRNA gene predicted gene 28175
Tssr6507 1 42261923 to 42261969 46 + TSS region transcription start site region 6507
Cpgi200 1 42261956 to 42262166 210 CpG island CpG island 200
Gm28140 1 42324590 to 42355937 31347 - lincRNA gene predicted gene 28140
Gm46088 1 42331816 to 42350940 19124 - lncRNA gene predicted gene, 46088
Gm36678 1 42399266 to 42427644 28378 - lncRNA gene predicted gene, 36678
Cpgi201 1 42416072 to 42416265 193 CpG island CpG island 201
D1Mit233 1 42474152 to 42474288 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 233
Cpgi202 1 42491566 to 42492074 508 CpG island CpG island 202
Gm37047 1 42491813 to 42495663 3850 + unclassified gene predicted gene, 37047
Tssr11450 1 42498532 to 42498533 1 - TSS region transcription start site region 11450
Gm46089 1 42560407 to 42573333 12926 - lncRNA gene predicted gene, 46089
Gm36822 1 42573783 to 42582017 8234 - lncRNA gene predicted gene, 36822
Gm30248 1 42598931 to 42641594 42663 - lncRNA gene predicted gene, 30248
D1Mit517 1 42627598 to 42627715 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-517
Pantr1 1 42648200 to 42694825 46625 - lincRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
Tssr11451 1 42651324 to 42651328 4 - TSS region transcription start site region 11451
4930420N18Rik 1 42651726 to 42652401 675 + unclassified gene RIKEN cDNA 4930420N18 gene
Tssr11452 1 42654492 to 42654497 5 - TSS region transcription start site region 11452
D1Mit433 1 42659196 to 42659320 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 433
Tssr11453 1 42665076 to 42665086 10 - TSS region transcription start site region 11453
Tssr11454 1 42667638 to 42667673 35 - TSS region transcription start site region 11454
Tssr67 1 42672789 to 42672815 26 + TSS region transcription start site region 67
Tssr11455 1 42681432 to 42681435 3 - TSS region transcription start site region 11455
Gm42411 1 42682365 to 42696565 14200 + lncRNA gene predicted gene 42411
Cpgi203 1 42684253 to 42685140 887 CpG island CpG island 203
Cpgi204 1 42686176 to 42687005 829 CpG island CpG island 204
Tssr11456 1 42693100 to 42693111 11 - TSS region transcription start site region 11456
Tssr11457 1 42693117 to 42693137 20 - TSS region transcription start site region 11457
Tssr11458 1 42693147 to 42693158 11 - TSS region transcription start site region 11458
Cpgi205 1 42693925 to 42695286 1361 CpG island CpG island 205
Tssr6508 1 42694095 to 42694101 6 + TSS region transcription start site region 6508
Tssr11459 1 42694813 to 42694877 64 - TSS region transcription start site region 11459
Tssr6509 1 42694893 to 42694942 49 + TSS region transcription start site region 6509
Gm20646 1 42694925 to 42744791 49866 + sense overlapping lncRNA gene predicted gene 20646
Tssr11460 1 42694948 to 42695014 66 - TSS region transcription start site region 11460
Tssr6510 1 42694948 to 42694982 34 + TSS region transcription start site region 6510
Tssr11461 1 42695191 to 42695204 13 - TSS region transcription start site region 11461
Tssr11462 1 42695279 to 42695290 11 - TSS region transcription start site region 11462
Tssr11463 1 42695412 to 42695457 45 - TSS region transcription start site region 11463
Cpgi206 1 42695518 to 42699208 3690 CpG island CpG island 206
D1Mit228.1 1 42695599 to 42695734 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228.1
Tssr6511 1 42695714 to 42695721 7 + TSS region transcription start site region 6511
Tssr6512 1 42695729 to 42695776 47 + TSS region transcription start site region 6512
Tssr6513 1 42695809 to 42695820 11 + TSS region transcription start site region 6513
D1Mit228 1 42695810 to 42695938 128 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 228
Pou3f3 1 42697146 to 42700210 3064 + protein coding gene POU domain, class 3, transcription factor 3
Tssr6514 1 42699641 to 42699652 11 + TSS region transcription start site region 6514
Tssr6515 1 42699662 to 42699681 19 + TSS region transcription start site region 6515
2900092D14Rik 1 42700336 to 42703176 2840 + lncRNA gene RIKEN cDNA 2900092D14 gene
Tssr6516 1 42701165 to 42701169 4 + TSS region transcription start site region 6516
D1Mit246 1 42704071 to 42704217 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 246
Pantr2 1 42707061 to 42713454 6393 - lncRNA gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2
Tssr11464 1 42711339 to 42711342 3 - TSS region transcription start site region 11464
Cpgi207 1 42713196 to 42713834 638 CpG island CpG island 207
Tssr11465 1 42713686 to 42713698 12 - TSS region transcription start site region 11465
Tssr11466 1 42713749 to 42713755 6 - TSS region transcription start site region 11466
Cpgi208 1 42714386 to 42714582 196 CpG island CpG island 208
Gm46090 1 42738847 to 42744791 5944 + lncRNA gene predicted gene, 46090
Dalir 1 42750712 to 42752881 2169 + lincRNA gene DNMT1 associated long intergenic non-coding RNA
Gm46091 1 42762307 to 42774147 11840 + lncRNA gene predicted gene, 46091
Cpgi209 1 42780500 to 42780667 167 CpG island CpG island 209
Cpgi210 1 42850970 to 42851892 922 CpG island CpG island 210
Mrps9 1 42851233 to 42905683 54450 + protein coding gene mitochondrial ribosomal protein S9
Tssr6517 1 42851253 to 42851295 42 + TSS region transcription start site region 6517
Gm23126 1 42866685 to 42866818 133 - snoRNA gene predicted gene, 23126