Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:40537756-40887897

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il18rap 1 40515362 to 40551705 36343 + protein coding gene interleukin 18 receptor accessory protein
Tssr6482 1 40542957 to 40542970 13 + TSS region transcription start site region 6482
Tssr6483 1 40542984 to 40542991 7 + TSS region transcription start site region 6483
Tssr6484 1 40542994 to 40543008 14 + TSS region transcription start site region 6484
Gm35801 1 40572183 to 40580519 8336 - antisense lncRNA gene predicted gene, 35801
Tssr6485 1 40580068 to 40580092 24 + TSS region transcription start site region 6485
Slc9a4 1 40580081 to 40630725 50644 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 4
Tssr11446 1 40580146 to 40580152 6 - TSS region transcription start site region 11446
Tssr6486 1 40580293 to 40580302 9 + TSS region transcription start site region 6486
Tssr6487 1 40580312 to 40580334 22 + TSS region transcription start site region 6487
Tssr6488 1 40580340 to 40580349 9 + TSS region transcription start site region 6488
Tssr6489 1 40580363 to 40580374 11 + TSS region transcription start site region 6489
Tssr6490 1 40580471 to 40580481 10 + TSS region transcription start site region 6490
Tssr6491 1 40580492 to 40580510 18 + TSS region transcription start site region 6491
Tssr6492 1 40580521 to 40580531 10 + TSS region transcription start site region 6492
Tssr11447 1 40580639 to 40580677 38 - TSS region transcription start site region 11447
Gm37435 1 40582895 to 40586841 3946 - unclassified gene predicted gene, 37435
Tssr6493 1 40600913 to 40600949 36 + TSS region transcription start site region 6493
Tssr6494 1 40606255 to 40606261 6 + TSS region transcription start site region 6494
Tssr6495 1 40606319 to 40606330 11 + TSS region transcription start site region 6495
Cpgi197 1 40680625 to 40682378 1753 CpG island CpG island 197
Tssr6496 1 40681361 to 40681380 19 + TSS region transcription start site region 6496
Tssr6497 1 40681571 to 40681606 35 + TSS region transcription start site region 6497
Tssr6498 1 40681608 to 40681644 36 + TSS region transcription start site region 6498
Tssr6499 1 40681659 to 40681666 7 + TSS region transcription start site region 6499
Slc9a2 1 40681712 to 40768885 87173 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 2
Tssr6500 1 40684074 to 40684077 3 + TSS region transcription start site region 6500
Gm37623 1 40691442 to 40697636 6194 - antisense lncRNA gene predicted gene, 37623
D1Mit172 1 40712756 to 40712897 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 172
Tssr6501 1 40720679 to 40720685 6 + TSS region transcription start site region 6501
Cpgi198 1 40767766 to 40767945 179 CpG island CpG island 198
Tssr6502 1 40771374 to 40771402 28 + TSS region transcription start site region 6502
Gm37915 1 40771385 to 40785343 13958 + antisense lncRNA gene predicted gene, 37915
Mfsd9 1 40772040 to 40790657 18617 - protein coding gene major facilitator superfamily domain containing 9
Cpgi199 1 40790435 to 40791001 566 CpG island CpG island 199
Tssr11448 1 40790642 to 40790686 44 - TSS region transcription start site region 11448
Tssr6503 1 40805578 to 40805692 114 + TSS region transcription start site region 6503
Tmem182 1 40805601 to 40856887 51286 + protein coding gene transmembrane protein 182
Pwgrq11 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 11
Pwgrq9 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 9
Pwgrq10 1 40828848 to 67231097 26402249 QTL post-weaning growth rate QTL 10
Gm5973 1 40863737 to 40864232 495 - pseudogene predicted gene 5973