Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:40075051-40375082

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm16894 1 40076228 to 40085851 9623 - antisense lncRNA gene predicted gene, 16894
Tssr61 1 40079374 to 40079376 2 + TSS region transcription start site region 61
D1Mit320 1 40079689 to 40079778 89 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 320
Il1r2 1 40083308 to 40125230 41922 + protein coding gene interleukin 1 receptor, type II
Tssr62 1 40084710 to 40084717 7 + TSS region transcription start site region 62
Tssr6411 1 40084733 to 40084749 16 + TSS region transcription start site region 6411
Tssr6412 1 40084764 to 40084770 6 + TSS region transcription start site region 6412
Tssr6413 1 40084775 to 40084784 9 + TSS region transcription start site region 6413
Tssr6414 1 40085198 to 40085228 30 + TSS region transcription start site region 6414
Cpgi194 1 40085761 to 40086064 303 CpG island CpG island 194
Tssr11414 1 40085823 to 40085862 39 - TSS region transcription start site region 11414
Tssr6415 1 40086091 to 40086094 3 + TSS region transcription start site region 6415
Gm37347 1 40088511 to 40091581 3070 + unclassified gene predicted gene, 37347
Tssr6416 1 40101375 to 40101378 3 + TSS region transcription start site region 6416
Tssr11415 1 40107406 to 40107414 8 - TSS region transcription start site region 11415
Tssr11416 1 40130473 to 40130476 3 - TSS region transcription start site region 11416
Gm35741 1 40149100 to 40152599 3499 + lncRNA gene predicted gene, 35741
Tssr11417 1 40163444 to 40163447 3 - TSS region transcription start site region 11417
Tssr6417 1 40224985 to 40225043 58 + TSS region transcription start site region 6417
Il1r1 1 40225014 to 40316201 91187 + protein coding gene interleukin 1 receptor, type I
Tssr6418 1 40225051 to 40225082 31 + TSS region transcription start site region 6418
Tssr6419 1 40225100 to 40225146 46 + TSS region transcription start site region 6419
Tssr6420 1 40225261 to 40225280 19 + TSS region transcription start site region 6420
Tssr6421 1 40237215 to 40237225 10 + TSS region transcription start site region 6421
Gm38070 1 40238020 to 40244499 6479 + unclassified gene predicted gene, 38070
Tssr6422 1 40240970 to 40240971 1 + TSS region transcription start site region 6422
Tssr6423 1 40250969 to 40250995 26 + TSS region transcription start site region 6423
D1Mit232 1 40262417 to 40262558 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 232
Sagg 1 40262417 to 45874398 5611981 heritable phenotypic marker saggy
Cpgi195 1 40266404 to 40266937 533 CpG island CpG island 195
Tssr63 1 40266539 to 40266557 18 + TSS region transcription start site region 63
Tssr6424 1 40266578 to 40266659 81 + TSS region transcription start site region 6424
Tssr6425 1 40324570 to 40324623 53 + TSS region transcription start site region 6425
Il1rl2 1 40324610 to 40367562 42952 + protein coding gene interleukin 1 receptor-like 2
Cpgi196 1 40325509 to 40326183 674 CpG island CpG island 196
Tssr6426 1 40325586 to 40325609 23 + TSS region transcription start site region 6426
Gm17970 1 40353852 to 40354536 684 + pseudogene predicted gene, 17970
Tssr6427 1 40356253 to 40356273 20 + TSS region transcription start site region 6427
Tssr64 1 40359163 to 40359169 6 + TSS region transcription start site region 64
Tssr6428 1 40363829 to 40363838 9 + TSS region transcription start site region 6428