Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:39903793-40153801

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map4k4 1 39900913 to 40026310 125397 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 4
Tssr6400 1 39904008 to 39904035 27 + TSS region transcription start site region 6400
Tssr6401 1 39904122 to 39904164 42 + TSS region transcription start site region 6401
Tssr6402 1 39907144 to 39907162 18 + TSS region transcription start site region 6402
Cpgi192 1 39935755 to 39935983 228 CpG island CpG island 192
Cpgi193 1 39936257 to 39936794 537 CpG island CpG island 193
Tssr6403 1 39971366 to 39971367 1 + TSS region transcription start site region 6403
Tssr6404 1 39986624 to 39986633 9 + TSS region transcription start site region 6404
D1Mit212 1 39992995 to 39993140 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 212
Tssr6405 1 40009816 to 40009831 15 + TSS region transcription start site region 6405
Tssr6406 1 40009899 to 40009939 40 + TSS region transcription start site region 6406
Tssr6407 1 40010045 to 40010063 18 + TSS region transcription start site region 6407
Tssr6408 1 40025364 to 40025388 24 + TSS region transcription start site region 6408
Tssr6409 1 40028793 to 40028801 8 + TSS region transcription start site region 6409
4930456G14Rik 1 40049039 to 40050368 1329 - unclassified gene RIKEN cDNA 4930456G14 gene
Tssr6410 1 40059348 to 40059351 3 + TSS region transcription start site region 6410
Gm16894 1 40076228 to 40085851 9623 - antisense lncRNA gene predicted gene, 16894
Tssr61 1 40079374 to 40079376 2 + TSS region transcription start site region 61
D1Mit320 1 40079689 to 40079778 89 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 320
Il1r2 1 40083308 to 40125230 41922 + protein coding gene interleukin 1 receptor, type II
Tssr62 1 40084710 to 40084717 7 + TSS region transcription start site region 62
Tssr6411 1 40084733 to 40084749 16 + TSS region transcription start site region 6411
Tssr6412 1 40084764 to 40084770 6 + TSS region transcription start site region 6412
Tssr6413 1 40084775 to 40084784 9 + TSS region transcription start site region 6413
Tssr6414 1 40085198 to 40085228 30 + TSS region transcription start site region 6414
Cpgi194 1 40085761 to 40086064 303 CpG island CpG island 194
Tssr11414 1 40085823 to 40085862 39 - TSS region transcription start site region 11414
Tssr6415 1 40086091 to 40086094 3 + TSS region transcription start site region 6415
Gm37347 1 40088511 to 40091581 3070 + unclassified gene predicted gene, 37347
Tssr6416 1 40101375 to 40101378 3 + TSS region transcription start site region 6416
Tssr11415 1 40107406 to 40107414 8 - TSS region transcription start site region 11415
Tssr11416 1 40130473 to 40130476 3 - TSS region transcription start site region 11416
Gm35741 1 40149100 to 40152599 3499 + lncRNA gene predicted gene, 35741