Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:39540051-40910082

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266 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnot11 1 39535802 to 39546881 11079 + protein coding gene CCR4-NOT transcription complex, subunit 11
Gm15832 1 39547570 to 39552002 4432 - unclassified non-coding RNA gene predicted gene 15832
Snord89 1 39548747 to 39548840 93 - snoRNA gene small nucleolar RNA, C/D box 89
Tssr11369 1 39550034 to 39550038 4 - TSS region transcription start site region 11369
Gm18446 1 39550269 to 39550845 576 + pseudogene predicted gene, 18446
Rnf149 1 39551296 to 39577405 26109 - protein coding gene ring finger protein 149
Tssr6384 1 39551299 to 39551305 6 + TSS region transcription start site region 6384
Tssr6385 1 39551707 to 39551724 17 + TSS region transcription start site region 6385
Tssr6386 1 39551729 to 39551738 9 + TSS region transcription start site region 6386
Tssr6387 1 39551794 to 39551813 19 + TSS region transcription start site region 6387
Tssr6388 1 39551830 to 39551856 26 + TSS region transcription start site region 6388
Tssr11370 1 39551882 to 39551893 11 - TSS region transcription start site region 11370
Tssr11371 1 39551910 to 39551919 9 - TSS region transcription start site region 11371
Tssr6389 1 39551922 to 39551951 29 + TSS region transcription start site region 6389
Tssr11372 1 39551972 to 39551977 5 - TSS region transcription start site region 11372
Tssr11373 1 39551993 to 39552004 11 - TSS region transcription start site region 11373
Tssr11374 1 39552027 to 39552045 18 - TSS region transcription start site region 11374
Tssr11375 1 39552134 to 39552157 23 - TSS region transcription start site region 11375
Tssr11376 1 39552192 to 39552220 28 - TSS region transcription start site region 11376
Tssr11377 1 39552290 to 39552303 13 - TSS region transcription start site region 11377
Tssr11378 1 39552305 to 39552316 11 - TSS region transcription start site region 11378
Tssr11379 1 39552317 to 39552346 29 - TSS region transcription start site region 11379
Tssr11380 1 39552356 to 39552367 11 - TSS region transcription start site region 11380
Tssr11381 1 39552369 to 39552374 5 - TSS region transcription start site region 11381
Tssr11382 1 39552403 to 39552412 9 - TSS region transcription start site region 11382
Tssr11383 1 39553324 to 39553367 43 - TSS region transcription start site region 11383
Tssr6390 1 39555472 to 39555485 13 + TSS region transcription start site region 6390
Tssr11384 1 39555523 to 39555543 20 - TSS region transcription start site region 11384
Tssr11385 1 39555640 to 39555673 33 - TSS region transcription start site region 11385
Tssr11386 1 39555997 to 39556022 25 - TSS region transcription start site region 11386
Tssr11387 1 39557819 to 39557829 10 - TSS region transcription start site region 11387
Tssr11388 1 39558301 to 39558325 24 - TSS region transcription start site region 11388
Tssr11389 1 39558362 to 39558380 18 - TSS region transcription start site region 11389
Tssr11390 1 39558931 to 39558943 12 - TSS region transcription start site region 11390
Tssr11391 1 39558961 to 39558973 12 - TSS region transcription start site region 11391
Tssr11392 1 39564043 to 39564051 8 - TSS region transcription start site region 11392
Tssr11393 1 39567014 to 39567048 34 - TSS region transcription start site region 11393
Tssr11394 1 39567617 to 39567623 6 - TSS region transcription start site region 11394
Tssr11395 1 39570924 to 39570974 50 - TSS region transcription start site region 11395
Tssr11396 1 39571000 to 39571027 27 - TSS region transcription start site region 11396
Tssr11397 1 39571157 to 39571164 7 - TSS region transcription start site region 11397
Gm23722 1 39573746 to 39573875 129 - snoRNA gene predicted gene, 23722
Cpgi188 1 39576396 to 39577839 1443 CpG island CpG island 188
Tssr11398 1 39577288 to 39577312 24 - TSS region transcription start site region 11398
Tssr11399 1 39577317 to 39577331 14 - TSS region transcription start site region 11399
Tssr11400 1 39577340 to 39577427 87 - TSS region transcription start site region 11400
Tssr6391 1 39578891 to 39578909 18 + TSS region transcription start site region 6391
Tssr11401 1 39580893 to 39580904 11 - TSS region transcription start site region 11401
Gm5100 1 39597417 to 39598005 588 - pseudogene predicted gene 5100
Tssr59 1 39608596 to 39608621 25 - TSS region transcription start site region 59
Tssr60 1 39614644 to 39614651 7 + TSS region transcription start site region 60
Tssr11402 1 39615687 to 39615690 3 - TSS region transcription start site region 11402
Creg2 1 39618406 to 39651182 32776 - protein coding gene cellular repressor of E1A-stimulated genes 2
Tssr11403 1 39621197 to 39621209 12 - TSS region transcription start site region 11403
Tssr11404 1 39629450 to 39629456 6 - TSS region transcription start site region 11404
Cpgi189 1 39650128 to 39651410 1282 CpG island CpG island 189
D930019O06Rik 1 39650176 to 39657390 7214 + antisense lncRNA gene RIKEN cDNA D930019O06
Tssr6392 1 39650600 to 39650609 9 + TSS region transcription start site region 6392
Tssr6393 1 39650727 to 39650738 11 + TSS region transcription start site region 6393
Tssr11405 1 39650854 to 39650887 33 - TSS region transcription start site region 11405
Tssr11406 1 39650940 to 39650991 51 - TSS region transcription start site region 11406
Tssr11407 1 39651165 to 39651196 31 - TSS region transcription start site region 11407
Tssr11408 1 39651282 to 39651321 39 - TSS region transcription start site region 11408
Rfx8 1 39665299 to 39720989 55690 - protein coding gene regulatory factor X 8
D1Ertd259e 1 39682951 to 39683200 249 DNA segment DNA segment, Chr 1, ERATO Doi 259, expressed
Cpgi190 1 39720598 to 39721183 585 CpG island CpG island 190
Tssr11409 1 39720960 to 39720975 15 - TSS region transcription start site region 11409
Tssr11410 1 39720989 to 39721015 26 - TSS region transcription start site region 11410
Tssr11411 1 39739057 to 39739060 3 - TSS region transcription start site region 11411
D1Dcr32 1 39764977 to 39765072 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 32
Gm3646 1 39804148 to 39805332 1184 - protein coding gene predicted gene 3646
Tssr11412 1 39805311 to 39805345 34 - TSS region transcription start site region 11412
1700066B17Rik 1 39842428 to 39847330 4902 - lincRNA gene RIKEN cDNA 1700066B17 gene
Tssr11413 1 39847322 to 39847334 12 - TSS region transcription start site region 11413
Gm35600 1 39852437 to 39864814 12377 + lncRNA gene predicted gene, 35600
Tssr6394 1 39852441 to 39852469 28 + TSS region transcription start site region 6394
Cpgi191 1 39900110 to 39902052 1942 CpG island CpG island 191
Tssr6395 1 39900883 to 39900963 80 + TSS region transcription start site region 6395
Map4k4 1 39900913 to 40026310 125397 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 4
Tssr6396 1 39901029 to 39901074 45 + TSS region transcription start site region 6396
Tssr6397 1 39901076 to 39901100 24 + TSS region transcription start site region 6397
Tssr6398 1 39901739 to 39901742 3 + TSS region transcription start site region 6398
Tssr6399 1 39903442 to 39903460 18 + TSS region transcription start site region 6399
Tssr6400 1 39904008 to 39904035 27 + TSS region transcription start site region 6400
Tssr6401 1 39904122 to 39904164 42 + TSS region transcription start site region 6401
Tssr6402 1 39907144 to 39907162 18 + TSS region transcription start site region 6402
Cpgi192 1 39935755 to 39935983 228 CpG island CpG island 192
Cpgi193 1 39936257 to 39936794 537 CpG island CpG island 193
Tssr6403 1 39971366 to 39971367 1 + TSS region transcription start site region 6403
Tssr6404 1 39986624 to 39986633 9 + TSS region transcription start site region 6404
D1Mit212 1 39992995 to 39993140 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 212
Tssr6405 1 40009816 to 40009831 15 + TSS region transcription start site region 6405
Tssr6406 1 40009899 to 40009939 40 + TSS region transcription start site region 6406
Tssr6407 1 40010045 to 40010063 18 + TSS region transcription start site region 6407
Tssr6408 1 40025364 to 40025388 24 + TSS region transcription start site region 6408
Tssr6409 1 40028793 to 40028801 8 + TSS region transcription start site region 6409
4930456G14Rik 1 40049039 to 40050368 1329 - unclassified gene RIKEN cDNA 4930456G14 gene
Tssr6410 1 40059348 to 40059351 3 + TSS region transcription start site region 6410
Gm16894 1 40076228 to 40085851 9623 - antisense lncRNA gene predicted gene, 16894
Tssr61 1 40079374 to 40079376 2 + TSS region transcription start site region 61
D1Mit320 1 40079689 to 40079778 89 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 320
Il1r2 1 40083308 to 40125230 41922 + protein coding gene interleukin 1 receptor, type II
Tssr62 1 40084710 to 40084717 7 + TSS region transcription start site region 62
Tssr6411 1 40084733 to 40084749 16 + TSS region transcription start site region 6411
Tssr6412 1 40084764 to 40084770 6 + TSS region transcription start site region 6412
Tssr6413 1 40084775 to 40084784 9 + TSS region transcription start site region 6413
Tssr6414 1 40085198 to 40085228 30 + TSS region transcription start site region 6414
Cpgi194 1 40085761 to 40086064 303 CpG island CpG island 194
Tssr11414 1 40085823 to 40085862 39 - TSS region transcription start site region 11414
Tssr6415 1 40086091 to 40086094 3 + TSS region transcription start site region 6415
Gm37347 1 40088511 to 40091581 3070 + unclassified gene predicted gene, 37347
Tssr6416 1 40101375 to 40101378 3 + TSS region transcription start site region 6416
Tssr11415 1 40107406 to 40107414 8 - TSS region transcription start site region 11415
Tssr11416 1 40130473 to 40130476 3 - TSS region transcription start site region 11416
Gm35741 1 40149100 to 40152599 3499 + lncRNA gene predicted gene, 35741
Tssr11417 1 40163444 to 40163447 3 - TSS region transcription start site region 11417
Tssr6417 1 40224985 to 40225043 58 + TSS region transcription start site region 6417
Il1r1 1 40225014 to 40316201 91187 + protein coding gene interleukin 1 receptor, type I
Tssr6418 1 40225051 to 40225082 31 + TSS region transcription start site region 6418
Tssr6419 1 40225100 to 40225146 46 + TSS region transcription start site region 6419
Tssr6420 1 40225261 to 40225280 19 + TSS region transcription start site region 6420
Tssr6421 1 40237215 to 40237225 10 + TSS region transcription start site region 6421
Gm38070 1 40238020 to 40244499 6479 + unclassified gene predicted gene, 38070
Tssr6422 1 40240970 to 40240971 1 + TSS region transcription start site region 6422
Tssr6423 1 40250969 to 40250995 26 + TSS region transcription start site region 6423
Sagg 1 40262417 to 45874398 5611981 heritable phenotypic marker saggy
D1Mit232 1 40262417 to 40262558 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 232
Cpgi195 1 40266404 to 40266937 533 CpG island CpG island 195
Tssr63 1 40266539 to 40266557 18 + TSS region transcription start site region 63
Tssr6424 1 40266578 to 40266659 81 + TSS region transcription start site region 6424
Tssr6425 1 40324570 to 40324623 53 + TSS region transcription start site region 6425
Il1rl2 1 40324610 to 40367562 42952 + protein coding gene interleukin 1 receptor-like 2
Cpgi196 1 40325509 to 40326183 674 CpG island CpG island 196
Tssr6426 1 40325586 to 40325609 23 + TSS region transcription start site region 6426
Gm17970 1 40353852 to 40354536 684 + pseudogene predicted gene, 17970
Tssr6427 1 40356253 to 40356273 20 + TSS region transcription start site region 6427
Tssr64 1 40359163 to 40359169 6 + TSS region transcription start site region 64
Tssr6428 1 40363829 to 40363838 9 + TSS region transcription start site region 6428
Tssr6429 1 40380568 to 40380586 18 + TSS region transcription start site region 6429
Tssr11418 1 40381069 to 40381099 30 - TSS region transcription start site region 11418
Tssr6430 1 40381279 to 40381295 16 + TSS region transcription start site region 6430
Tssr6431 1 40381463 to 40381474 11 + TSS region transcription start site region 6431
Tssr11419 1 40382492 to 40382497 5 - TSS region transcription start site region 11419
Tssr11420 1 40393314 to 40393319 5 - TSS region transcription start site region 11420
Tssr11421 1 40397473 to 40397503 30 - TSS region transcription start site region 11421
Tssr11422 1 40397507 to 40397518 11 - TSS region transcription start site region 11422
Tssr11423 1 40397528 to 40397539 11 - TSS region transcription start site region 11423
Tssr11424 1 40398451 to 40398455 4 - TSS region transcription start site region 11424
Tssr6432 1 40398582 to 40398611 29 + TSS region transcription start site region 6432
Tssr6433 1 40399834 to 40399845 11 + TSS region transcription start site region 6433
Tssr6434 1 40399865 to 40399879 14 + TSS region transcription start site region 6434
Tssr6435 1 40404927 to 40404937 10 + TSS region transcription start site region 6435
Tssr6436 1 40404939 to 40404950 11 + TSS region transcription start site region 6436
Tssr6437 1 40404959 to 40404974 15 + TSS region transcription start site region 6437
Tssr6438 1 40405686 to 40405687 1 + TSS region transcription start site region 6438
Tssr6439 1 40422061 to 40422063 2 + TSS region transcription start site region 6439
Tssr6440 1 40424115 to 40424157 42 + TSS region transcription start site region 6440
Tssr11425 1 40425327 to 40425332 5 - TSS region transcription start site region 11425
Tssr6441 1 40425577 to 40425590 13 + TSS region transcription start site region 6441
Tssr11426 1 40427330 to 40427359 29 - TSS region transcription start site region 11426
Tssr6442 1 40427522 to 40427536 14 + TSS region transcription start site region 6442
Tssr6443 1 40428289 to 40428320 31 + TSS region transcription start site region 6443
Tssr6444 1 40429136 to 40429177 41 + TSS region transcription start site region 6444
Tssr6445 1 40429196 to 40429209 13 + TSS region transcription start site region 6445
Tssr6446 1 40429563 to 40429586 23 + TSS region transcription start site region 6446
Il1rl1 1 40429570 to 40465415 35845 + protein coding gene interleukin 1 receptor-like 1
Tssr6447 1 40430182 to 40430191 9 + TSS region transcription start site region 6447
Tssr6448 1 40431043 to 40431057 14 + TSS region transcription start site region 6448
Tssr6449 1 40431415 to 40431429 14 + TSS region transcription start site region 6449
Tssr11427 1 40432078 to 40432101 23 - TSS region transcription start site region 11427
Tssr6450 1 40433897 to 40433905 8 + TSS region transcription start site region 6450
Tssr6451 1 40434528 to 40434532 4 + TSS region transcription start site region 6451
Tssr6452 1 40434798 to 40434819 21 + TSS region transcription start site region 6452
Tssr11428 1 40437085 to 40437094 9 - TSS region transcription start site region 11428
Tssr11429 1 40437100 to 40437123 23 - TSS region transcription start site region 11429
Tssr6453 1 40437276 to 40437292 16 + TSS region transcription start site region 6453
Tssr11430 1 40437431 to 40437442 11 - TSS region transcription start site region 11430
Tssr11431 1 40439495 to 40439506 11 - TSS region transcription start site region 11431
Tssr11432 1 40439536 to 40439546 10 - TSS region transcription start site region 11432
Tssr6454 1 40439642 to 40439649 7 + TSS region transcription start site region 6454
Tssr6455 1 40439767 to 40439788 21 + TSS region transcription start site region 6455
Tssr6456 1 40441285 to 40441296 11 + TSS region transcription start site region 6456
Tssr6457 1 40441316 to 40441332 16 + TSS region transcription start site region 6457
Tssr11433 1 40441657 to 40441704 47 - TSS region transcription start site region 11433
Tssr6458 1 40442587 to 40442606 19 + TSS region transcription start site region 6458
Tssr11434 1 40444709 to 40444748 39 - TSS region transcription start site region 11434
Tssr6459 1 40444874 to 40444883 9 + TSS region transcription start site region 6459
Tssr6460 1 40444906 to 40444921 15 + TSS region transcription start site region 6460
D1Mit122.1 1 40446118 to 40446228 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 122.1
D1Mit122 1 40446190 to 40446341 151 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 122
Tssr11435 1 40448367 to 40448400 33 - TSS region transcription start site region 11435
Tssr11436 1 40448435 to 40448442 7 - TSS region transcription start site region 11436
Tssr6461 1 40448670 to 40448680 10 + TSS region transcription start site region 6461
Tssr6462 1 40462231 to 40462249 18 + TSS region transcription start site region 6462
Tssr6463 1 40462300 to 40462333 33 + TSS region transcription start site region 6463
Tssr6464 1 40462340 to 40462358 18 + TSS region transcription start site region 6464
Il18r1 1 40465552 to 40500854 35302 + protein coding gene interleukin 18 receptor 1
Tssr6465 1 40465641 to 40465698 57 + TSS region transcription start site region 6465
Tssr6466 1 40465703 to 40465729 26 + TSS region transcription start site region 6466
Tssr6467 1 40465965 to 40465975 10 + TSS region transcription start site region 6467