Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:39002288-40152312

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35222 1 39026007 to 39027357 1350 - lncRNA gene predicted gene, 35222
Gm37821 1 39048648 to 39057637 8989 - lincRNA gene predicted gene, 37821
Gm37091 1 39081252 to 39083338 2086 - unclassified gene predicted gene, 37091
Del(1)2Lt 1 39088990 to 39114692 25702 cytogenetic marker deletion, Chr 1, Edward H Leiter 2
Tssr6370 1 39090093 to 39090098 5 + TSS region transcription start site region 6370
D1Mit123 1 39093727 to 39093858 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 123
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Mir6349 1 39186896 to 39186992 96 - miRNA gene microRNA 6349
Cpgi183 1 39192459 to 39194696 2237 CpG island CpG island 183
Npas2 1 39193731 to 39363236 169505 + protein coding gene neuronal PAS domain protein 2
Tssr6371 1 39193739 to 39193798 59 + TSS region transcription start site region 6371
Tssr56 1 39238542 to 39238544 2 + TSS region transcription start site region 56
Tssr6372 1 39272907 to 39272911 4 + TSS region transcription start site region 6372
Gm20428 1 39276283 to 39276565 282 - pseudogene predicted gene 20428
Gm17904 1 39278577 to 39281028 2451 - pseudogene predicted gene, 17904
Gm3617 1 39314899 to 39315453 554 + pseudogene predicted gene 3617
Tssr6373 1 39352444 to 39352445 1 + TSS region transcription start site region 6373
Cpgi184 1 39361957 to 39362127 170 CpG island CpG island 184
Tssr6374 1 39362992 to 39362997 5 + TSS region transcription start site region 6374
Cpgi185 1 39367311 to 39368794 1483 CpG island CpG island 185
Tssr6375 1 39367816 to 39367848 32 + TSS region transcription start site region 6375
Rpl31 1 39367851 to 39371911 4060 + protein coding gene ribosomal protein L31
Tssr6376 1 39367874 to 39367885 11 + TSS region transcription start site region 6376
Tssr6377 1 39367900 to 39367931 31 + TSS region transcription start site region 6377
Tssr6378 1 39368102 to 39368128 26 + TSS region transcription start site region 6378
Tssr6379 1 39369184 to 39369198 14 + TSS region transcription start site region 6379
Tbc1d8 1 39371492 to 39478755 107263 - protein coding gene TBC1 domain family, member 8
D1Dcr31 1 39391897 to 39391992 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 31
Gm37265 1 39419048 to 39419932 884 - unclassified gene predicted gene, 37265
Tssr11364 1 39439067 to 39439083 16 - TSS region transcription start site region 11364
Tssr6380 1 39449505 to 39449528 23 + TSS region transcription start site region 6380
Tssr11365 1 39450264 to 39450275 11 - TSS region transcription start site region 11365
Tssr11366 1 39455733 to 39455739 6 - TSS region transcription start site region 11366
Tssr57 1 39467916 to 39467935 19 - TSS region transcription start site region 57
Cpgi186 1 39477795 to 39479039 1244 CpG island CpG island 186
Tssr11367 1 39478680 to 39478733 53 - TSS region transcription start site region 11367
Tssr11368 1 39478734 to 39478760 26 - TSS region transcription start site region 11368
Tssr6381 1 39478848 to 39478867 19 + TSS region transcription start site region 6381
Tssr58 1 39482436 to 39482438 2 - TSS region transcription start site region 58
Tssr6382 1 39493346 to 39493357 11 + TSS region transcription start site region 6382
Gm24826 1 39519533 to 39519747 214 + snoRNA gene predicted gene, 24826
Cpgi187 1 39535300 to 39536432 1132 CpG island CpG island 187
Tssr6383 1 39535747 to 39535839 92 + TSS region transcription start site region 6383
Cnot11 1 39535802 to 39546881 11079 + protein coding gene CCR4-NOT transcription complex, subunit 11
Gm15832 1 39547570 to 39552002 4432 - unclassified non-coding RNA gene predicted gene 15832
Snord89 1 39548747 to 39548840 93 - snoRNA gene small nucleolar RNA, C/D box 89
Tssr11369 1 39550034 to 39550038 4 - TSS region transcription start site region 11369
Gm18446 1 39550269 to 39550845 576 + pseudogene predicted gene, 18446
Rnf149 1 39551296 to 39577405 26109 - protein coding gene ring finger protein 149
Tssr6384 1 39551299 to 39551305 6 + TSS region transcription start site region 6384
Tssr6385 1 39551707 to 39551724 17 + TSS region transcription start site region 6385
Tssr6386 1 39551729 to 39551738 9 + TSS region transcription start site region 6386
Tssr6387 1 39551794 to 39551813 19 + TSS region transcription start site region 6387
Tssr6388 1 39551830 to 39551856 26 + TSS region transcription start site region 6388
Tssr11370 1 39551882 to 39551893 11 - TSS region transcription start site region 11370
Tssr11371 1 39551910 to 39551919 9 - TSS region transcription start site region 11371
Tssr6389 1 39551922 to 39551951 29 + TSS region transcription start site region 6389
Tssr11372 1 39551972 to 39551977 5 - TSS region transcription start site region 11372
Tssr11373 1 39551993 to 39552004 11 - TSS region transcription start site region 11373
Tssr11374 1 39552027 to 39552045 18 - TSS region transcription start site region 11374
Tssr11375 1 39552134 to 39552157 23 - TSS region transcription start site region 11375
Tssr11376 1 39552192 to 39552220 28 - TSS region transcription start site region 11376
Tssr11377 1 39552290 to 39552303 13 - TSS region transcription start site region 11377
Tssr11378 1 39552305 to 39552316 11 - TSS region transcription start site region 11378
Tssr11379 1 39552317 to 39552346 29 - TSS region transcription start site region 11379
Tssr11380 1 39552356 to 39552367 11 - TSS region transcription start site region 11380
Tssr11381 1 39552369 to 39552374 5 - TSS region transcription start site region 11381
Tssr11382 1 39552403 to 39552412 9 - TSS region transcription start site region 11382
Tssr11383 1 39553324 to 39553367 43 - TSS region transcription start site region 11383
Tssr6390 1 39555472 to 39555485 13 + TSS region transcription start site region 6390
Tssr11384 1 39555523 to 39555543 20 - TSS region transcription start site region 11384
Tssr11385 1 39555640 to 39555673 33 - TSS region transcription start site region 11385
Tssr11386 1 39555997 to 39556022 25 - TSS region transcription start site region 11386
Tssr11387 1 39557819 to 39557829 10 - TSS region transcription start site region 11387
Tssr11388 1 39558301 to 39558325 24 - TSS region transcription start site region 11388
Tssr11389 1 39558362 to 39558380 18 - TSS region transcription start site region 11389
Tssr11390 1 39558931 to 39558943 12 - TSS region transcription start site region 11390
Tssr11391 1 39558961 to 39558973 12 - TSS region transcription start site region 11391
Tssr11392 1 39564043 to 39564051 8 - TSS region transcription start site region 11392
Tssr11393 1 39567014 to 39567048 34 - TSS region transcription start site region 11393
Tssr11394 1 39567617 to 39567623 6 - TSS region transcription start site region 11394
Tssr11395 1 39570924 to 39570974 50 - TSS region transcription start site region 11395
Tssr11396 1 39571000 to 39571027 27 - TSS region transcription start site region 11396
Tssr11397 1 39571157 to 39571164 7 - TSS region transcription start site region 11397
Gm23722 1 39573746 to 39573875 129 - snoRNA gene predicted gene, 23722
Cpgi188 1 39576396 to 39577839 1443 CpG island CpG island 188
Tssr11398 1 39577288 to 39577312 24 - TSS region transcription start site region 11398
Tssr11399 1 39577317 to 39577331 14 - TSS region transcription start site region 11399
Tssr11400 1 39577340 to 39577427 87 - TSS region transcription start site region 11400
Tssr6391 1 39578891 to 39578909 18 + TSS region transcription start site region 6391
Tssr11401 1 39580893 to 39580904 11 - TSS region transcription start site region 11401
Gm5100 1 39597417 to 39598005 588 - pseudogene predicted gene 5100
Tssr59 1 39608596 to 39608621 25 - TSS region transcription start site region 59
Tssr60 1 39614644 to 39614651 7 + TSS region transcription start site region 60
Tssr11402 1 39615687 to 39615690 3 - TSS region transcription start site region 11402
Creg2 1 39618406 to 39651182 32776 - protein coding gene cellular repressor of E1A-stimulated genes 2
Tssr11403 1 39621197 to 39621209 12 - TSS region transcription start site region 11403
Tssr11404 1 39629450 to 39629456 6 - TSS region transcription start site region 11404
Cpgi189 1 39650128 to 39651410 1282 CpG island CpG island 189
D930019O06Rik 1 39650176 to 39657390 7214 + antisense lncRNA gene RIKEN cDNA D930019O06
Tssr6392 1 39650600 to 39650609 9 + TSS region transcription start site region 6392
Tssr6393 1 39650727 to 39650738 11 + TSS region transcription start site region 6393
Tssr11405 1 39650854 to 39650887 33 - TSS region transcription start site region 11405
Tssr11406 1 39650940 to 39650991 51 - TSS region transcription start site region 11406
Tssr11407 1 39651165 to 39651196 31 - TSS region transcription start site region 11407
Tssr11408 1 39651282 to 39651321 39 - TSS region transcription start site region 11408
Rfx8 1 39665299 to 39720989 55690 - protein coding gene regulatory factor X 8
D1Ertd259e 1 39682951 to 39683200 249 DNA segment DNA segment, Chr 1, ERATO Doi 259, expressed
Cpgi190 1 39720598 to 39721183 585 CpG island CpG island 190
Tssr11409 1 39720960 to 39720975 15 - TSS region transcription start site region 11409
Tssr11410 1 39720989 to 39721015 26 - TSS region transcription start site region 11410
Tssr11411 1 39739057 to 39739060 3 - TSS region transcription start site region 11411
D1Dcr32 1 39764977 to 39765072 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 32
Gm3646 1 39804148 to 39805332 1184 - protein coding gene predicted gene 3646
Tssr11412 1 39805311 to 39805345 34 - TSS region transcription start site region 11412
1700066B17Rik 1 39842428 to 39847330 4902 - lincRNA gene RIKEN cDNA 1700066B17 gene
Tssr11413 1 39847322 to 39847334 12 - TSS region transcription start site region 11413
Gm35600 1 39852437 to 39864814 12377 + lncRNA gene predicted gene, 35600
Tssr6394 1 39852441 to 39852469 28 + TSS region transcription start site region 6394
Cpgi191 1 39900110 to 39902052 1942 CpG island CpG island 191
Tssr6395 1 39900883 to 39900963 80 + TSS region transcription start site region 6395
Map4k4 1 39900913 to 40026310 125397 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 4
Tssr6396 1 39901029 to 39901074 45 + TSS region transcription start site region 6396
Tssr6397 1 39901076 to 39901100 24 + TSS region transcription start site region 6397
Tssr6398 1 39901739 to 39901742 3 + TSS region transcription start site region 6398
Tssr6399 1 39903442 to 39903460 18 + TSS region transcription start site region 6399
Tssr6400 1 39904008 to 39904035 27 + TSS region transcription start site region 6400
Tssr6401 1 39904122 to 39904164 42 + TSS region transcription start site region 6401
Tssr6402 1 39907144 to 39907162 18 + TSS region transcription start site region 6402
Cpgi192 1 39935755 to 39935983 228 CpG island CpG island 192
Cpgi193 1 39936257 to 39936794 537 CpG island CpG island 193
Tssr6403 1 39971366 to 39971367 1 + TSS region transcription start site region 6403
Tssr6404 1 39986624 to 39986633 9 + TSS region transcription start site region 6404
D1Mit212 1 39992995 to 39993140 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 212
Tssr6405 1 40009816 to 40009831 15 + TSS region transcription start site region 6405
Tssr6406 1 40009899 to 40009939 40 + TSS region transcription start site region 6406
Tssr6407 1 40010045 to 40010063 18 + TSS region transcription start site region 6407
Tssr6408 1 40025364 to 40025388 24 + TSS region transcription start site region 6408
Tssr6409 1 40028793 to 40028801 8 + TSS region transcription start site region 6409
4930456G14Rik 1 40049039 to 40050368 1329 - unclassified gene RIKEN cDNA 4930456G14 gene
Tssr6410 1 40059348 to 40059351 3 + TSS region transcription start site region 6410
Gm16894 1 40076228 to 40085851 9623 - antisense lncRNA gene predicted gene, 16894
Tssr61 1 40079374 to 40079376 2 + TSS region transcription start site region 61
D1Mit320 1 40079689 to 40079778 89 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 320
Il1r2 1 40083308 to 40125230 41922 + protein coding gene interleukin 1 receptor, type II
Tssr62 1 40084710 to 40084717 7 + TSS region transcription start site region 62
Tssr6411 1 40084733 to 40084749 16 + TSS region transcription start site region 6411
Tssr6412 1 40084764 to 40084770 6 + TSS region transcription start site region 6412
Tssr6413 1 40084775 to 40084784 9 + TSS region transcription start site region 6413
Tssr6414 1 40085198 to 40085228 30 + TSS region transcription start site region 6414
Cpgi194 1 40085761 to 40086064 303 CpG island CpG island 194
Tssr11414 1 40085823 to 40085862 39 - TSS region transcription start site region 11414
Tssr6415 1 40086091 to 40086094 3 + TSS region transcription start site region 6415
Gm37347 1 40088511 to 40091581 3070 + unclassified gene predicted gene, 37347
Tssr6416 1 40101375 to 40101378 3 + TSS region transcription start site region 6416
Tssr11415 1 40107406 to 40107414 8 - TSS region transcription start site region 11415
Tssr11416 1 40130473 to 40130476 3 - TSS region transcription start site region 11416
Gm35741 1 40149100 to 40152599 3499 + lncRNA gene predicted gene, 35741
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17