Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38993731-39563236

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdcl3 1 38987814 to 38997236 9422 + protein coding gene phosducin-like 3
Gm37309 1 38992678 to 38994316 1638 + unclassified gene predicted gene, 37309
Gm35222 1 39026007 to 39027357 1350 - lncRNA gene predicted gene, 35222
Gm37821 1 39048648 to 39057637 8989 - lincRNA gene predicted gene, 37821
Gm37091 1 39081252 to 39083338 2086 - unclassified gene predicted gene, 37091
Del(1)2Lt 1 39088990 to 39114692 25702 cytogenetic marker deletion, Chr 1, Edward H Leiter 2
Tssr6370 1 39090093 to 39090098 5 + TSS region transcription start site region 6370
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
D1Mit123 1 39093727 to 39093858 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 123
Mir6349 1 39186896 to 39186992 96 - miRNA gene microRNA 6349
Cpgi183 1 39192459 to 39194696 2237 CpG island CpG island 183
Npas2 1 39193731 to 39363236 169505 + protein coding gene neuronal PAS domain protein 2
Tssr6371 1 39193739 to 39193798 59 + TSS region transcription start site region 6371
Tssr56 1 39238542 to 39238544 2 + TSS region transcription start site region 56
Tssr6372 1 39272907 to 39272911 4 + TSS region transcription start site region 6372
Gm20428 1 39276283 to 39276565 282 - pseudogene predicted gene 20428
Gm17904 1 39278577 to 39281028 2451 - pseudogene predicted gene, 17904
Gm3617 1 39314899 to 39315453 554 + pseudogene predicted gene 3617
Tssr6373 1 39352444 to 39352445 1 + TSS region transcription start site region 6373
Cpgi184 1 39361957 to 39362127 170 CpG island CpG island 184
Tssr6374 1 39362992 to 39362997 5 + TSS region transcription start site region 6374
Cpgi185 1 39367311 to 39368794 1483 CpG island CpG island 185
Tssr6375 1 39367816 to 39367848 32 + TSS region transcription start site region 6375
Rpl31 1 39367851 to 39371911 4060 + protein coding gene ribosomal protein L31
Tssr6376 1 39367874 to 39367885 11 + TSS region transcription start site region 6376
Tssr6377 1 39367900 to 39367931 31 + TSS region transcription start site region 6377
Tssr6378 1 39368102 to 39368128 26 + TSS region transcription start site region 6378
Tssr6379 1 39369184 to 39369198 14 + TSS region transcription start site region 6379
Tbc1d8 1 39371492 to 39478755 107263 - protein coding gene TBC1 domain family, member 8
D1Dcr31 1 39391897 to 39391992 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 31
Gm37265 1 39419048 to 39419932 884 - unclassified gene predicted gene, 37265
Tssr11364 1 39439067 to 39439083 16 - TSS region transcription start site region 11364
Tssr6380 1 39449505 to 39449528 23 + TSS region transcription start site region 6380
Tssr11365 1 39450264 to 39450275 11 - TSS region transcription start site region 11365
Tssr11366 1 39455733 to 39455739 6 - TSS region transcription start site region 11366
Tssr57 1 39467916 to 39467935 19 - TSS region transcription start site region 57
Cpgi186 1 39477795 to 39479039 1244 CpG island CpG island 186
Tssr11367 1 39478680 to 39478733 53 - TSS region transcription start site region 11367
Tssr11368 1 39478734 to 39478760 26 - TSS region transcription start site region 11368
Tssr6381 1 39478848 to 39478867 19 + TSS region transcription start site region 6381
Tssr58 1 39482436 to 39482438 2 - TSS region transcription start site region 58
Tssr6382 1 39493346 to 39493357 11 + TSS region transcription start site region 6382
Gm24826 1 39519533 to 39519747 214 + snoRNA gene predicted gene, 24826
Cpgi187 1 39535300 to 39536432 1132 CpG island CpG island 187
Tssr6383 1 39535747 to 39535839 92 + TSS region transcription start site region 6383
Cnot11 1 39535802 to 39546881 11079 + protein coding gene CCR4-NOT transcription complex, subunit 11
Gm15832 1 39547570 to 39552002 4432 - unclassified non-coding RNA gene predicted gene 15832
Snord89 1 39548747 to 39548840 93 - snoRNA gene small nucleolar RNA, C/D box 89
Tssr11369 1 39550034 to 39550038 4 - TSS region transcription start site region 11369
Gm18446 1 39550269 to 39550845 576 + pseudogene predicted gene, 18446
Rnf149 1 39551296 to 39577405 26109 - protein coding gene ring finger protein 149
Tssr6384 1 39551299 to 39551305 6 + TSS region transcription start site region 6384
Tssr6385 1 39551707 to 39551724 17 + TSS region transcription start site region 6385
Tssr6386 1 39551729 to 39551738 9 + TSS region transcription start site region 6386
Tssr6387 1 39551794 to 39551813 19 + TSS region transcription start site region 6387
Tssr6388 1 39551830 to 39551856 26 + TSS region transcription start site region 6388
Tssr11370 1 39551882 to 39551893 11 - TSS region transcription start site region 11370
Tssr11371 1 39551910 to 39551919 9 - TSS region transcription start site region 11371
Tssr6389 1 39551922 to 39551951 29 + TSS region transcription start site region 6389
Tssr11372 1 39551972 to 39551977 5 - TSS region transcription start site region 11372
Tssr11373 1 39551993 to 39552004 11 - TSS region transcription start site region 11373
Tssr11374 1 39552027 to 39552045 18 - TSS region transcription start site region 11374
Tssr11375 1 39552134 to 39552157 23 - TSS region transcription start site region 11375
Tssr11376 1 39552192 to 39552220 28 - TSS region transcription start site region 11376
Tssr11377 1 39552290 to 39552303 13 - TSS region transcription start site region 11377
Tssr11378 1 39552305 to 39552316 11 - TSS region transcription start site region 11378
Tssr11379 1 39552317 to 39552346 29 - TSS region transcription start site region 11379
Tssr11380 1 39552356 to 39552367 11 - TSS region transcription start site region 11380
Tssr11381 1 39552369 to 39552374 5 - TSS region transcription start site region 11381
Tssr11382 1 39552403 to 39552412 9 - TSS region transcription start site region 11382
Tssr11383 1 39553324 to 39553367 43 - TSS region transcription start site region 11383
Tssr6390 1 39555472 to 39555485 13 + TSS region transcription start site region 6390
Tssr11384 1 39555523 to 39555543 20 - TSS region transcription start site region 11384
Tssr11385 1 39555640 to 39555673 33 - TSS region transcription start site region 11385
Tssr11386 1 39555997 to 39556022 25 - TSS region transcription start site region 11386
Tssr11387 1 39557819 to 39557829 10 - TSS region transcription start site region 11387
Tssr11388 1 39558301 to 39558325 24 - TSS region transcription start site region 11388
Tssr11389 1 39558362 to 39558380 18 - TSS region transcription start site region 11389
Tssr11390 1 39558931 to 39558943 12 - TSS region transcription start site region 11390
Tssr11391 1 39558961 to 39558973 12 - TSS region transcription start site region 11391
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17