Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38903739-39483798

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6366 1 38907926 to 38907930 4 + TSS region transcription start site region 6366
Gm6621 1 38907945 to 38908716 771 + pseudogene predicted gene 6621
Nms 1 38939149 to 38950276 11127 + protein coding gene neuromedin S
Cpgi181 1 38946045 to 38946240 195 CpG island CpG island 181
Gm35171 1 38980806 to 38981810 1004 + lncRNA gene predicted gene, 35171
Cpgi182 1 38987424 to 38988076 652 CpG island CpG island 182
Tssr6367 1 38987766 to 38987779 13 + TSS region transcription start site region 6367
Tssr6368 1 38987784 to 38987805 21 + TSS region transcription start site region 6368
Tssr6369 1 38987806 to 38987827 21 + TSS region transcription start site region 6369
Pdcl3 1 38987814 to 38997236 9422 + protein coding gene phosducin-like 3
Gm37309 1 38992678 to 38994316 1638 + unclassified gene predicted gene, 37309
Gm35222 1 39026007 to 39027357 1350 - lncRNA gene predicted gene, 35222
Gm37821 1 39048648 to 39057637 8989 - lincRNA gene predicted gene, 37821
Gm37091 1 39081252 to 39083338 2086 - unclassified gene predicted gene, 37091
Del(1)2Lt 1 39088990 to 39114692 25702 cytogenetic marker deletion, Chr 1, Edward H Leiter 2
Tssr6370 1 39090093 to 39090098 5 + TSS region transcription start site region 6370
D1Mit123 1 39093727 to 39093858 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 123
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
Mir6349 1 39186896 to 39186992 96 - miRNA gene microRNA 6349
Cpgi183 1 39192459 to 39194696 2237 CpG island CpG island 183
Npas2 1 39193731 to 39363236 169505 + protein coding gene neuronal PAS domain protein 2
Tssr6371 1 39193739 to 39193798 59 + TSS region transcription start site region 6371
Tssr56 1 39238542 to 39238544 2 + TSS region transcription start site region 56
Tssr6372 1 39272907 to 39272911 4 + TSS region transcription start site region 6372
Gm20428 1 39276283 to 39276565 282 - pseudogene predicted gene 20428
Gm17904 1 39278577 to 39281028 2451 - pseudogene predicted gene, 17904
Gm3617 1 39314899 to 39315453 554 + pseudogene predicted gene 3617
Tssr6373 1 39352444 to 39352445 1 + TSS region transcription start site region 6373
Cpgi184 1 39361957 to 39362127 170 CpG island CpG island 184
Tssr6374 1 39362992 to 39362997 5 + TSS region transcription start site region 6374
Cpgi185 1 39367311 to 39368794 1483 CpG island CpG island 185
Tssr6375 1 39367816 to 39367848 32 + TSS region transcription start site region 6375
Rpl31 1 39367851 to 39371911 4060 + protein coding gene ribosomal protein L31
Tssr6376 1 39367874 to 39367885 11 + TSS region transcription start site region 6376
Tssr6377 1 39367900 to 39367931 31 + TSS region transcription start site region 6377
Tssr6378 1 39368102 to 39368128 26 + TSS region transcription start site region 6378
Tssr6379 1 39369184 to 39369198 14 + TSS region transcription start site region 6379
Tbc1d8 1 39371492 to 39478755 107263 - protein coding gene TBC1 domain family, member 8
D1Dcr31 1 39391897 to 39391992 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 31
Gm37265 1 39419048 to 39419932 884 - unclassified gene predicted gene, 37265
Tssr11364 1 39439067 to 39439083 16 - TSS region transcription start site region 11364
Tssr6380 1 39449505 to 39449528 23 + TSS region transcription start site region 6380
Tssr11365 1 39450264 to 39450275 11 - TSS region transcription start site region 11365
Tssr11366 1 39455733 to 39455739 6 - TSS region transcription start site region 11366
Tssr57 1 39467916 to 39467935 19 - TSS region transcription start site region 57
Cpgi186 1 39477795 to 39479039 1244 CpG island CpG island 186
Tssr11367 1 39478680 to 39478733 53 - TSS region transcription start site region 11367
Tssr11368 1 39478734 to 39478760 26 - TSS region transcription start site region 11368
Tssr6381 1 39478848 to 39478867 19 + TSS region transcription start site region 6381
Tssr58 1 39482436 to 39482438 2 - TSS region transcription start site region 58
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17