Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 1:38693669-38936687

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29 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syncq1 1 38094000 to 38932000 838000 QTL synovial calcification QTL 1
D1Dcr29 1 38703153 to 38703254 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 29
Tssr54 1 38704065 to 38704072 7 + TSS region transcription start site region 54
Gm38135 1 38722620 to 38723121 501 + pseudogene predicted gene, 38135
D1Dcr30 1 38723559 to 38723655 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 30
Tssr55 1 38725234 to 38725238 4 + TSS region transcription start site region 55
2610300A13Rik 1 38767184 to 38767686 502 + lncRNA gene RIKEN cDNA 2610300A13 gene
Tssr11352 1 38777584 to 38777591 7 - TSS region transcription start site region 11352
Lonrf2 1 38793669 to 38836687 43018 - protein coding gene LON peptidase N-terminal domain and ring finger 2
Tssr11353 1 38795084 to 38795087 3 - TSS region transcription start site region 11353
Tssr11354 1 38824649 to 38824654 5 - TSS region transcription start site region 11354
Tssr11355 1 38831377 to 38831389 12 - TSS region transcription start site region 11355
2810038L03Rik 1 38835197 to 38836374 1177 - lncRNA gene RIKEN cDNA 2810038L03 gene
Cpgi179 1 38835576 to 38837160 1584 CpG island CpG island 179
Tssr11356 1 38836533 to 38836628 95 - TSS region transcription start site region 11356
Tssr11357 1 38836631 to 38836647 16 - TSS region transcription start site region 11357
Tssr11358 1 38836676 to 38836698 22 - TSS region transcription start site region 11358
Chst10 1 38863867 to 38898161 34294 - protein coding gene carbohydrate sulfotransferase 10
Gm37707 1 38884754 to 38888072 3318 + lncRNA gene predicted gene, 37707
Gm51581 1 38896610 to 38898950 2340 + protein coding gene predicted gene, 51581
Cpgi180 1 38897396 to 38898359 963 CpG island CpG island 180
Tssr11359 1 38897924 to 38897961 37 - TSS region transcription start site region 11359
Tssr11360 1 38897980 to 38897992 12 - TSS region transcription start site region 11360
Tssr11361 1 38898037 to 38898058 21 - TSS region transcription start site region 11361
Tssr11362 1 38898066 to 38898077 11 - TSS region transcription start site region 11362
Tssr11363 1 38898084 to 38898177 93 - TSS region transcription start site region 11363
Tssr6365 1 38902866 to 38902891 25 + TSS region transcription start site region 6365
Tssr6366 1 38907926 to 38907930 4 + TSS region transcription start site region 6366
Gm6621 1 38907945 to 38908716 771 + pseudogene predicted gene 6621