Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38413727-39773858

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aff3 1 38175393 to 38628333 452940 - protein coding gene AF4/FMR2 family, member 3
Tssr11336 1 38472450 to 38472453 3 - TSS region transcription start site region 11336
Gm34727 1 38487519 to 38488047 528 + pseudogene predicted gene, 34727
Tssr11337 1 38491806 to 38491810 4 - TSS region transcription start site region 11337
D1Dcr26 1 38528672 to 38528767 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 26
D1Dcr27 1 38541472 to 38541568 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 27
D1Mit321 1 38541478 to 38541608 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 321
2310050P20Rik 1 38554284 to 38556376 2092 unclassified gene RIKEN cDNA 2310050P20 gene
Tssr11338 1 38603922 to 38603925 3 - TSS region transcription start site region 11338
Tssr11339 1 38615538 to 38615542 4 - TSS region transcription start site region 11339
Cpgi178 1 38626448 to 38628304 1856 CpG island CpG island 178
Tssr11340 1 38627415 to 38627467 52 - TSS region transcription start site region 11340
Tssr11341 1 38627538 to 38627549 11 - TSS region transcription start site region 11341
Tssr11342 1 38627569 to 38627582 13 - TSS region transcription start site region 11342
Tssr11343 1 38627586 to 38627605 19 - TSS region transcription start site region 11343
Tssr11344 1 38628077 to 38628092 15 - TSS region transcription start site region 11344
Gm34596 1 38630667 to 38653368 22701 + lncRNA gene predicted gene, 34596
Tssr11345 1 38638631 to 38638633 2 - TSS region transcription start site region 11345
Tssr11346 1 38664922 to 38664933 11 - TSS region transcription start site region 11346
Tssr11347 1 38664934 to 38664945 11 - TSS region transcription start site region 11347
Tssr11348 1 38664947 to 38665000 53 - TSS region transcription start site region 11348
Tssr11349 1 38665005 to 38665012 7 - TSS region transcription start site region 11349
Tssr11350 1 38665023 to 38665034 11 - TSS region transcription start site region 11350
Tssr11351 1 38665592 to 38665599 7 - TSS region transcription start site region 11351
D1Dcr28 1 38692321 to 38692416 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 28
D1Dcr29 1 38703153 to 38703254 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 29
Tssr54 1 38704065 to 38704072 7 + TSS region transcription start site region 54
Gm38135 1 38722620 to 38723121 501 + pseudogene predicted gene, 38135
D1Dcr30 1 38723559 to 38723655 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 30
Tssr55 1 38725234 to 38725238 4 + TSS region transcription start site region 55
2610300A13Rik 1 38767184 to 38767686 502 + unclassified gene RIKEN cDNA 2610300A13 gene
Tssr11352 1 38777584 to 38777591 7 - TSS region transcription start site region 11352
Lonrf2 1 38793652 to 38836715 43063 - protein coding gene LON peptidase N-terminal domain and ring finger 2
Tssr11353 1 38795084 to 38795087 3 - TSS region transcription start site region 11353
Tssr11354 1 38824649 to 38824654 5 - TSS region transcription start site region 11354
Tssr11355 1 38831377 to 38831389 12 - TSS region transcription start site region 11355
Cpgi179 1 38835576 to 38837160 1584 CpG island CpG island 179
Tssr11356 1 38836533 to 38836628 95 - TSS region transcription start site region 11356
Tssr11357 1 38836631 to 38836647 16 - TSS region transcription start site region 11357
Tssr11358 1 38836676 to 38836698 22 - TSS region transcription start site region 11358
Chst10 1 38863867 to 38898161 34294 - protein coding gene carbohydrate sulfotransferase 10
Gm37707 1 38884754 to 38888072 3318 + antisense lncRNA gene predicted gene, 37707
Cpgi180 1 38897396 to 38898359 963 CpG island CpG island 180
Tssr11359 1 38897924 to 38897961 37 - TSS region transcription start site region 11359
Tssr11360 1 38897980 to 38897992 12 - TSS region transcription start site region 11360
Tssr11361 1 38898037 to 38898058 21 - TSS region transcription start site region 11361
Tssr11362 1 38898066 to 38898077 11 - TSS region transcription start site region 11362
Tssr11363 1 38898084 to 38898177 93 - TSS region transcription start site region 11363
Tssr6365 1 38902866 to 38902891 25 + TSS region transcription start site region 6365
Tssr6366 1 38907926 to 38907930 4 + TSS region transcription start site region 6366
Gm6621 1 38907945 to 38908716 771 + pseudogene predicted gene 6621
Nms 1 38939149 to 38950276 11127 + protein coding gene neuromedin S
Cpgi181 1 38946045 to 38946240 195 CpG island CpG island 181
Gm35171 1 38980806 to 38981810 1004 + lncRNA gene predicted gene, 35171
Cpgi182 1 38987424 to 38988076 652 CpG island CpG island 182
Tssr6367 1 38987766 to 38987779 13 + TSS region transcription start site region 6367
Tssr6368 1 38987784 to 38987805 21 + TSS region transcription start site region 6368
Tssr6369 1 38987806 to 38987827 21 + TSS region transcription start site region 6369
Pdcl3 1 38987814 to 38997236 9422 + protein coding gene phosducin-like 3
Gm37309 1 38992678 to 38994316 1638 + unclassified gene predicted gene, 37309
Gm35222 1 39026007 to 39027357 1350 - lncRNA gene predicted gene, 35222
Gm37821 1 39048648 to 39057637 8989 - lincRNA gene predicted gene, 37821
Gm37091 1 39081252 to 39083338 2086 - unclassified gene predicted gene, 37091
Del(1)2Lt 1 39088990 to 39114692 25702 cytogenetic marker deletion, Chr 1, Edward H Leiter 2
Tssr6370 1 39090093 to 39090098 5 + TSS region transcription start site region 6370
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
D1Mit123 1 39093727 to 39093858 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 123
Mir6349 1 39186896 to 39186992 96 - miRNA gene microRNA 6349
Cpgi183 1 39192459 to 39194696 2237 CpG island CpG island 183
Npas2 1 39193731 to 39363236 169505 + protein coding gene neuronal PAS domain protein 2
Tssr6371 1 39193739 to 39193798 59 + TSS region transcription start site region 6371
Tssr56 1 39238542 to 39238544 2 + TSS region transcription start site region 56
Tssr6372 1 39272907 to 39272911 4 + TSS region transcription start site region 6372
Gm20428 1 39276283 to 39276565 282 - pseudogene predicted gene 20428
Gm17904 1 39278577 to 39281028 2451 - pseudogene predicted gene, 17904
Gm3617 1 39314899 to 39315453 554 + pseudogene predicted gene 3617
Tssr6373 1 39352444 to 39352445 1 + TSS region transcription start site region 6373
Cpgi184 1 39361957 to 39362127 170 CpG island CpG island 184
Tssr6374 1 39362992 to 39362997 5 + TSS region transcription start site region 6374
Cpgi185 1 39367311 to 39368794 1483 CpG island CpG island 185
Tssr6375 1 39367816 to 39367848 32 + TSS region transcription start site region 6375
Rpl31 1 39367851 to 39371911 4060 + protein coding gene ribosomal protein L31
Tssr6376 1 39367874 to 39367885 11 + TSS region transcription start site region 6376
Tssr6377 1 39367900 to 39367931 31 + TSS region transcription start site region 6377
Tssr6378 1 39368102 to 39368128 26 + TSS region transcription start site region 6378
Tssr6379 1 39369184 to 39369198 14 + TSS region transcription start site region 6379
Tbc1d8 1 39371492 to 39478755 107263 - protein coding gene TBC1 domain family, member 8
D1Dcr31 1 39391897 to 39391992 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 31
Gm37265 1 39419048 to 39419932 884 - unclassified gene predicted gene, 37265
Tssr11364 1 39439067 to 39439083 16 - TSS region transcription start site region 11364
Tssr6380 1 39449505 to 39449528 23 + TSS region transcription start site region 6380
Tssr11365 1 39450264 to 39450275 11 - TSS region transcription start site region 11365
Tssr11366 1 39455733 to 39455739 6 - TSS region transcription start site region 11366
Tssr57 1 39467916 to 39467935 19 - TSS region transcription start site region 57
Cpgi186 1 39477795 to 39479039 1244 CpG island CpG island 186
Tssr11367 1 39478680 to 39478733 53 - TSS region transcription start site region 11367
Tssr11368 1 39478734 to 39478760 26 - TSS region transcription start site region 11368
Tssr6381 1 39478848 to 39478867 19 + TSS region transcription start site region 6381
Tssr58 1 39482436 to 39482438 2 - TSS region transcription start site region 58
Tssr6382 1 39493346 to 39493357 11 + TSS region transcription start site region 6382
Gm24826 1 39519533 to 39519747 214 + snoRNA gene predicted gene, 24826
Cpgi187 1 39535300 to 39536432 1132 CpG island CpG island 187
Tssr6383 1 39535747 to 39535839 92 + TSS region transcription start site region 6383
Cnot11 1 39535802 to 39546881 11079 + protein coding gene CCR4-NOT transcription complex, subunit 11
Gm15832 1 39547570 to 39552002 4432 - unclassified non-coding RNA gene predicted gene 15832
Snord89 1 39548747 to 39548840 93 - snoRNA gene small nucleolar RNA, C/D box 89
Tssr11369 1 39550034 to 39550038 4 - TSS region transcription start site region 11369
Gm18446 1 39550269 to 39550845 576 + pseudogene predicted gene, 18446
Rnf149 1 39551296 to 39577405 26109 - protein coding gene ring finger protein 149
Tssr6384 1 39551299 to 39551305 6 + TSS region transcription start site region 6384
Tssr6385 1 39551707 to 39551724 17 + TSS region transcription start site region 6385
Tssr6386 1 39551729 to 39551738 9 + TSS region transcription start site region 6386
Tssr6387 1 39551794 to 39551813 19 + TSS region transcription start site region 6387
Tssr6388 1 39551830 to 39551856 26 + TSS region transcription start site region 6388
Tssr11370 1 39551882 to 39551893 11 - TSS region transcription start site region 11370
Tssr11371 1 39551910 to 39551919 9 - TSS region transcription start site region 11371
Tssr6389 1 39551922 to 39551951 29 + TSS region transcription start site region 6389
Tssr11372 1 39551972 to 39551977 5 - TSS region transcription start site region 11372
Tssr11373 1 39551993 to 39552004 11 - TSS region transcription start site region 11373
Tssr11374 1 39552027 to 39552045 18 - TSS region transcription start site region 11374
Tssr11375 1 39552134 to 39552157 23 - TSS region transcription start site region 11375
Tssr11376 1 39552192 to 39552220 28 - TSS region transcription start site region 11376
Tssr11377 1 39552290 to 39552303 13 - TSS region transcription start site region 11377
Tssr11378 1 39552305 to 39552316 11 - TSS region transcription start site region 11378
Tssr11379 1 39552317 to 39552346 29 - TSS region transcription start site region 11379
Tssr11380 1 39552356 to 39552367 11 - TSS region transcription start site region 11380
Tssr11381 1 39552369 to 39552374 5 - TSS region transcription start site region 11381
Tssr11382 1 39552403 to 39552412 9 - TSS region transcription start site region 11382
Tssr11383 1 39553324 to 39553367 43 - TSS region transcription start site region 11383
Tssr6390 1 39555472 to 39555485 13 + TSS region transcription start site region 6390
Tssr11384 1 39555523 to 39555543 20 - TSS region transcription start site region 11384
Tssr11385 1 39555640 to 39555673 33 - TSS region transcription start site region 11385
Tssr11386 1 39555997 to 39556022 25 - TSS region transcription start site region 11386
Tssr11387 1 39557819 to 39557829 10 - TSS region transcription start site region 11387
Tssr11388 1 39558301 to 39558325 24 - TSS region transcription start site region 11388
Tssr11389 1 39558362 to 39558380 18 - TSS region transcription start site region 11389
Tssr11390 1 39558931 to 39558943 12 - TSS region transcription start site region 11390
Tssr11391 1 39558961 to 39558973 12 - TSS region transcription start site region 11391
Tssr11392 1 39564043 to 39564051 8 - TSS region transcription start site region 11392
Tssr11393 1 39567014 to 39567048 34 - TSS region transcription start site region 11393
Tssr11394 1 39567617 to 39567623 6 - TSS region transcription start site region 11394
Tssr11395 1 39570924 to 39570974 50 - TSS region transcription start site region 11395
Tssr11396 1 39571000 to 39571027 27 - TSS region transcription start site region 11396
Tssr11397 1 39571157 to 39571164 7 - TSS region transcription start site region 11397
Gm23722 1 39573746 to 39573875 129 - snoRNA gene predicted gene, 23722
Cpgi188 1 39576396 to 39577839 1443 CpG island CpG island 188
Tssr11398 1 39577288 to 39577312 24 - TSS region transcription start site region 11398
Tssr11399 1 39577317 to 39577331 14 - TSS region transcription start site region 11399
Tssr11400 1 39577340 to 39577427 87 - TSS region transcription start site region 11400
Tssr6391 1 39578891 to 39578909 18 + TSS region transcription start site region 6391
Tssr11401 1 39580893 to 39580904 11 - TSS region transcription start site region 11401
Gm5100 1 39597417 to 39598005 588 - pseudogene predicted gene 5100
Tssr59 1 39608596 to 39608621 25 - TSS region transcription start site region 59
Tssr60 1 39614644 to 39614651 7 + TSS region transcription start site region 60
Tssr11402 1 39615687 to 39615690 3 - TSS region transcription start site region 11402
Creg2 1 39618406 to 39651182 32776 - protein coding gene cellular repressor of E1A-stimulated genes 2
Tssr11403 1 39621197 to 39621209 12 - TSS region transcription start site region 11403
Tssr11404 1 39629450 to 39629456 6 - TSS region transcription start site region 11404
Cpgi189 1 39650128 to 39651410 1282 CpG island CpG island 189
D930019O06Rik 1 39650176 to 39657390 7214 + antisense lncRNA gene RIKEN cDNA D930019O06
Tssr6392 1 39650600 to 39650609 9 + TSS region transcription start site region 6392
Tssr6393 1 39650727 to 39650738 11 + TSS region transcription start site region 6393
Tssr11405 1 39650854 to 39650887 33 - TSS region transcription start site region 11405
Tssr11406 1 39650940 to 39650991 51 - TSS region transcription start site region 11406
Tssr11407 1 39651165 to 39651196 31 - TSS region transcription start site region 11407
Tssr11408 1 39651282 to 39651321 39 - TSS region transcription start site region 11408
Rfx8 1 39665299 to 39720989 55690 - protein coding gene regulatory factor X 8
D1Ertd259e 1 39682951 to 39683200 249 DNA segment DNA segment, Chr 1, ERATO Doi 259, expressed
Cpgi190 1 39720598 to 39721183 585 CpG island CpG island 190
Tssr11409 1 39720960 to 39720975 15 - TSS region transcription start site region 11409
Tssr11410 1 39720989 to 39721015 26 - TSS region transcription start site region 11410
Tssr11411 1 39739057 to 39739060 3 - TSS region transcription start site region 11411
D1Dcr32 1 39764977 to 39765072 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 32
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17