Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38042245-38602498

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif5b 1 37998010 to 38055579 57569 + protein coding gene eukaryotic translation initiation factor 5B
Tssr6363 1 38042777 to 38042791 14 + TSS region transcription start site region 6363
Tssr6364 1 38049243 to 38049264 21 + TSS region transcription start site region 6364
Rev1 1 38052786 to 38129801 77015 - protein coding gene REV1, DNA directed polymerase
Tssr11328 1 38060586 to 38060590 4 - TSS region transcription start site region 11328
Gm37062 1 38076295 to 38077305 1010 - sense intronic lncRNA gene predicted gene, 37062
Tssr11329 1 38106830 to 38106831 1 - TSS region transcription start site region 11329
Tssr11330 1 38112149 to 38112153 4 - TSS region transcription start site region 11330
Tssr11331 1 38121045 to 38121049 4 - TSS region transcription start site region 11331
Cpgi173 1 38128850 to 38130543 1693 CpG island CpG island 173
Tssr11332 1 38129618 to 38129679 61 - TSS region transcription start site region 11332
Tssr11333 1 38129719 to 38129801 82 - TSS region transcription start site region 11333
Gm5099 1 38144023 to 38159892 15869 + lincRNA gene predicted gene 5099
Aff3 1 38175393 to 38628333 452940 - protein coding gene AF4/FMR2 family, member 3
Cpgi174 1 38209955 to 38210526 571 CpG island CpG island 174
Cpgi175 1 38218186 to 38218449 263 CpG island CpG island 175
Gm16150 1 38235420 to 38246666 11246 + antisense lncRNA gene predicted gene 16150
Cpgi176 1 38239554 to 38239792 238 CpG island CpG island 176
5330403D14Rik 1 38247931 to 38249269 1338 unclassified gene RIKEN cDNA 5330403D14 gene
6030495B02Rik 1 38305465 to 38308429 2964 unclassified gene RIKEN cDNA 6030495B02 gene
Gm16151 1 38307902 to 38311930 4028 + antisense lncRNA gene predicted gene 16151
Tssr11334 1 38320259 to 38320272 13 - TSS region transcription start site region 11334
Tssr11335 1 38321981 to 38321997 16 - TSS region transcription start site region 11335
2900002H24Rik 1 38322245 to 38322498 253 unclassified gene RIKEN cDNA 2900002H24 gene
Cpgi177 1 38358854 to 38359432 578 CpG island CpG island 177
Gm16152 1 38384949 to 38393974 9025 + antisense lncRNA gene predicted gene 16152
Tssr53 1 38393972 to 38393975 3 - TSS region transcription start site region 53
Tssr11336 1 38472450 to 38472453 3 - TSS region transcription start site region 11336
Gm34727 1 38487519 to 38488047 528 + pseudogene predicted gene, 34727
Tssr11337 1 38491806 to 38491810 4 - TSS region transcription start site region 11337
D1Dcr26 1 38528672 to 38528767 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 26
D1Dcr27 1 38541472 to 38541568 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 27
D1Mit321 1 38541478 to 38541608 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 321
2310050P20Rik 1 38554284 to 38556376 2092 unclassified gene RIKEN cDNA 2310050P20 gene