Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38007538-39247549

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif5b 1 37998010 to 38055579 57569 + protein coding gene eukaryotic translation initiation factor 5B
B230213L16Rik 1 38013853 to 38016924 3071 protein coding gene RIKEN cDNA B230213L16 gene
Tssr6335 1 38017848 to 38017862 14 + TSS region transcription start site region 6335
Tssr6336 1 38017865 to 38017877 12 + TSS region transcription start site region 6336
Tssr6337 1 38018046 to 38018060 14 + TSS region transcription start site region 6337
Tssr6338 1 38018067 to 38018084 17 + TSS region transcription start site region 6338
Tssr6339 1 38018979 to 38019023 44 + TSS region transcription start site region 6339
Tssr6340 1 38019027 to 38019049 22 + TSS region transcription start site region 6340
Tssr6341 1 38019068 to 38019081 13 + TSS region transcription start site region 6341
Tssr6342 1 38019098 to 38019109 11 + TSS region transcription start site region 6342
Tssr6343 1 38019115 to 38019127 12 + TSS region transcription start site region 6343
Tssr6344 1 38019149 to 38019163 14 + TSS region transcription start site region 6344
Tssr6345 1 38019168 to 38019192 24 + TSS region transcription start site region 6345
Tssr6346 1 38019231 to 38019243 12 + TSS region transcription start site region 6346
Tssr6347 1 38019261 to 38019280 19 + TSS region transcription start site region 6347
Tssr6348 1 38019409 to 38019420 11 + TSS region transcription start site region 6348
Tssr6349 1 38019448 to 38019482 34 + TSS region transcription start site region 6349
Tssr6350 1 38021667 to 38021686 19 + TSS region transcription start site region 6350
Tssr6351 1 38021704 to 38021722 18 + TSS region transcription start site region 6351
Tssr6352 1 38021730 to 38021743 13 + TSS region transcription start site region 6352
Tssr6353 1 38021753 to 38021788 35 + TSS region transcription start site region 6353
Tssr11327 1 38022187 to 38022205 18 - TSS region transcription start site region 11327
Tssr6354 1 38022234 to 38022254 20 + TSS region transcription start site region 6354
Tssr6355 1 38022273 to 38022293 20 + TSS region transcription start site region 6355
Gm34448 1 38023490 to 38030460 6970 - lncRNA gene predicted gene, 34448
Tssr6356 1 38032270 to 38032289 19 + TSS region transcription start site region 6356
Tssr6357 1 38034065 to 38034076 11 + TSS region transcription start site region 6357
Tssr6358 1 38035693 to 38035705 12 + TSS region transcription start site region 6358
Tssr6359 1 38035709 to 38035716 7 + TSS region transcription start site region 6359
Tssr6360 1 38035740 to 38035749 9 + TSS region transcription start site region 6360
Tssr6361 1 38035757 to 38035771 14 + TSS region transcription start site region 6361
Tssr6362 1 38035781 to 38035822 41 + TSS region transcription start site region 6362
Tssr6363 1 38042777 to 38042791 14 + TSS region transcription start site region 6363
Tssr6364 1 38049243 to 38049264 21 + TSS region transcription start site region 6364
Rev1 1 38052786 to 38129801 77015 - protein coding gene REV1, DNA directed polymerase
Tssr11328 1 38060586 to 38060590 4 - TSS region transcription start site region 11328
Gm37062 1 38076295 to 38077305 1010 - sense intronic lncRNA gene predicted gene, 37062
Tssr11329 1 38106830 to 38106831 1 - TSS region transcription start site region 11329
Tssr11330 1 38112149 to 38112153 4 - TSS region transcription start site region 11330
Tssr11331 1 38121045 to 38121049 4 - TSS region transcription start site region 11331
Cpgi173 1 38128850 to 38130543 1693 CpG island CpG island 173
Tssr11332 1 38129618 to 38129679 61 - TSS region transcription start site region 11332
Tssr11333 1 38129719 to 38129801 82 - TSS region transcription start site region 11333
Gm5099 1 38144023 to 38159892 15869 + lincRNA gene predicted gene 5099
Aff3 1 38175393 to 38628333 452940 - protein coding gene AF4/FMR2 family, member 3
Cpgi174 1 38209955 to 38210526 571 CpG island CpG island 174
Cpgi175 1 38218186 to 38218449 263 CpG island CpG island 175
Gm16150 1 38235420 to 38246666 11246 + antisense lncRNA gene predicted gene 16150
Cpgi176 1 38239554 to 38239792 238 CpG island CpG island 176
5330403D14Rik 1 38247931 to 38249269 1338 unclassified gene RIKEN cDNA 5330403D14 gene
6030495B02Rik 1 38305465 to 38308429 2964 unclassified gene RIKEN cDNA 6030495B02 gene
Gm16151 1 38307902 to 38311930 4028 + antisense lncRNA gene predicted gene 16151
Tssr11334 1 38320259 to 38320272 13 - TSS region transcription start site region 11334
Tssr11335 1 38321981 to 38321997 16 - TSS region transcription start site region 11335
2900002H24Rik 1 38322245 to 38322498 253 unclassified gene RIKEN cDNA 2900002H24 gene
Cpgi177 1 38358854 to 38359432 578 CpG island CpG island 177
Gm16152 1 38384949 to 38393974 9025 + antisense lncRNA gene predicted gene 16152
Tssr53 1 38393972 to 38393975 3 - TSS region transcription start site region 53
Tssr11336 1 38472450 to 38472453 3 - TSS region transcription start site region 11336
Gm34727 1 38487519 to 38488047 528 + pseudogene predicted gene, 34727
Tssr11337 1 38491806 to 38491810 4 - TSS region transcription start site region 11337
D1Dcr26 1 38528672 to 38528767 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 26
D1Dcr27 1 38541472 to 38541568 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 27
D1Mit321 1 38541478 to 38541608 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 321
2310050P20Rik 1 38554284 to 38556376 2092 unclassified gene RIKEN cDNA 2310050P20 gene
Tssr11338 1 38603922 to 38603925 3 - TSS region transcription start site region 11338
Tssr11339 1 38615538 to 38615542 4 - TSS region transcription start site region 11339
Cpgi178 1 38626448 to 38628304 1856 CpG island CpG island 178
Tssr11340 1 38627415 to 38627467 52 - TSS region transcription start site region 11340
Tssr11341 1 38627538 to 38627549 11 - TSS region transcription start site region 11341
Tssr11342 1 38627569 to 38627582 13 - TSS region transcription start site region 11342
Tssr11343 1 38627586 to 38627605 19 - TSS region transcription start site region 11343
Tssr11344 1 38628077 to 38628092 15 - TSS region transcription start site region 11344
Gm34596 1 38630667 to 38653368 22701 + lncRNA gene predicted gene, 34596
Tssr11345 1 38638631 to 38638633 2 - TSS region transcription start site region 11345
Tssr11346 1 38664922 to 38664933 11 - TSS region transcription start site region 11346
Tssr11347 1 38664934 to 38664945 11 - TSS region transcription start site region 11347
Tssr11348 1 38664947 to 38665000 53 - TSS region transcription start site region 11348
Tssr11349 1 38665005 to 38665012 7 - TSS region transcription start site region 11349
Tssr11350 1 38665023 to 38665034 11 - TSS region transcription start site region 11350
Tssr11351 1 38665592 to 38665599 7 - TSS region transcription start site region 11351
D1Dcr28 1 38692321 to 38692416 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 28
D1Dcr29 1 38703153 to 38703254 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 29
Tssr54 1 38704065 to 38704072 7 + TSS region transcription start site region 54
Gm38135 1 38722620 to 38723121 501 + pseudogene predicted gene, 38135
D1Dcr30 1 38723559 to 38723655 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 30
Tssr55 1 38725234 to 38725238 4 + TSS region transcription start site region 55
2610300A13Rik 1 38767184 to 38767686 502 + unclassified gene RIKEN cDNA 2610300A13 gene
Tssr11352 1 38777584 to 38777591 7 - TSS region transcription start site region 11352
Lonrf2 1 38793652 to 38836715 43063 - protein coding gene LON peptidase N-terminal domain and ring finger 2
Tssr11353 1 38795084 to 38795087 3 - TSS region transcription start site region 11353
Tssr11354 1 38824649 to 38824654 5 - TSS region transcription start site region 11354
Tssr11355 1 38831377 to 38831389 12 - TSS region transcription start site region 11355
Cpgi179 1 38835576 to 38837160 1584 CpG island CpG island 179
Tssr11356 1 38836533 to 38836628 95 - TSS region transcription start site region 11356
Tssr11357 1 38836631 to 38836647 16 - TSS region transcription start site region 11357
Tssr11358 1 38836676 to 38836698 22 - TSS region transcription start site region 11358
Chst10 1 38863867 to 38898161 34294 - protein coding gene carbohydrate sulfotransferase 10
Gm37707 1 38884754 to 38888072 3318 + antisense lncRNA gene predicted gene, 37707
Cpgi180 1 38897396 to 38898359 963 CpG island CpG island 180
Tssr11359 1 38897924 to 38897961 37 - TSS region transcription start site region 11359
Tssr11360 1 38897980 to 38897992 12 - TSS region transcription start site region 11360
Tssr11361 1 38898037 to 38898058 21 - TSS region transcription start site region 11361
Tssr11362 1 38898066 to 38898077 11 - TSS region transcription start site region 11362
Tssr11363 1 38898084 to 38898177 93 - TSS region transcription start site region 11363
Tssr6365 1 38902866 to 38902891 25 + TSS region transcription start site region 6365
Tssr6366 1 38907926 to 38907930 4 + TSS region transcription start site region 6366
Gm6621 1 38907945 to 38908716 771 + pseudogene predicted gene 6621
Nms 1 38939149 to 38950276 11127 + protein coding gene neuromedin S
Cpgi181 1 38946045 to 38946240 195 CpG island CpG island 181
Gm35171 1 38980806 to 38981810 1004 + lncRNA gene predicted gene, 35171
Cpgi182 1 38987424 to 38988076 652 CpG island CpG island 182
Tssr6367 1 38987766 to 38987779 13 + TSS region transcription start site region 6367
Tssr6368 1 38987784 to 38987805 21 + TSS region transcription start site region 6368
Tssr6369 1 38987806 to 38987827 21 + TSS region transcription start site region 6369
Pdcl3 1 38987814 to 38997236 9422 + protein coding gene phosducin-like 3
Gm37309 1 38992678 to 38994316 1638 + unclassified gene predicted gene, 37309
Gm35222 1 39026007 to 39027357 1350 - lncRNA gene predicted gene, 35222
Gm37821 1 39048648 to 39057637 8989 - lincRNA gene predicted gene, 37821
Gm37091 1 39081252 to 39083338 2086 - unclassified gene predicted gene, 37091
Del(1)2Lt 1 39088990 to 39114692 25702 cytogenetic marker deletion, Chr 1, Edward H Leiter 2
Tssr6370 1 39090093 to 39090098 5 + TSS region transcription start site region 6370
Lrnx11 1 39093727 to 74477206 35383479 QTL learning-contextual 11
D1Mit123 1 39093727 to 39093858 131 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 123
Mir6349 1 39186896 to 39186992 96 - miRNA gene microRNA 6349
Cpgi183 1 39192459 to 39194696 2237 CpG island CpG island 183
Npas2 1 39193731 to 39363236 169505 + protein coding gene neuronal PAS domain protein 2
Tssr6371 1 39193739 to 39193798 59 + TSS region transcription start site region 6371
Tssr56 1 39238542 to 39238544 2 + TSS region transcription start site region 56
Sle17 1 126517573 to 39093727 -87423846 QTL systematic lupus erythematosus susceptibility 17