Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 1:37952786-38229801

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70 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm15457 1 37933596 to 37954136 20540 + lncRNA gene predicted gene 15457
Lyg1 1 37946738 to 37957759 11021 - protein coding gene lysozyme G-like 1
Tssr11323 1 37957757 to 37957760 3 - TSS region transcription start site region 11323
D1Mit518 1 37966284 to 37966435 151 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-518
Gm23409 1 37973967 to 37974203 236 + unclassified non-coding RNA gene predicted gene, 23409
Txndc9 1 37985189 to 37997893 12704 - protein coding gene thioredoxin domain containing 9
Cpgi171 1 37996845 to 37997498 653 CpG island CpG island 171
Tssr11324 1 37996919 to 37996950 31 - TSS region transcription start site region 11324
Tssr11325 1 37996961 to 37996976 15 - TSS region transcription start site region 11325
Tssr11326 1 37997219 to 37997280 61 - TSS region transcription start site region 11326
Cpgi172 1 37997809 to 37998727 918 CpG island CpG island 172
Tssr6328 1 37997956 to 37997963 7 + TSS region transcription start site region 6328
Tssr6329 1 37997975 to 37997986 11 + TSS region transcription start site region 6329
Tssr49 1 37997987 to 37997994 7 + TSS region transcription start site region 49
Tssr6330 1 37998005 to 37998014 9 + TSS region transcription start site region 6330
Eif5b 1 37998010 to 38055579 57569 + protein coding gene eukaryotic translation initiation factor 5B
Tssr6331 1 37998097 to 37998114 17 + TSS region transcription start site region 6331
Tssr6332 1 37998115 to 37998149 34 + TSS region transcription start site region 6332
Tssr6333 1 37998152 to 37998165 13 + TSS region transcription start site region 6333
Tssr50 1 37998187 to 37998199 12 + TSS region transcription start site region 50
Tssr51 1 37998255 to 37998273 18 + TSS region transcription start site region 51
Tssr52 1 37998294 to 37998297 3 + TSS region transcription start site region 52
Tssr6334 1 37998774 to 37998777 3 + TSS region transcription start site region 6334
B230213L16Rik 1 38013853 to 38016924 3071 protein coding gene RIKEN cDNA B230213L16 gene
Tssr6335 1 38017848 to 38017862 14 + TSS region transcription start site region 6335
Tssr6336 1 38017865 to 38017877 12 + TSS region transcription start site region 6336
Tssr6337 1 38018046 to 38018060 14 + TSS region transcription start site region 6337
Tssr6338 1 38018067 to 38018084 17 + TSS region transcription start site region 6338
Tssr6339 1 38018979 to 38019023 44 + TSS region transcription start site region 6339
Tssr6340 1 38019027 to 38019049 22 + TSS region transcription start site region 6340
Tssr6341 1 38019068 to 38019081 13 + TSS region transcription start site region 6341
Tssr6342 1 38019098 to 38019109 11 + TSS region transcription start site region 6342
Tssr6343 1 38019115 to 38019127 12 + TSS region transcription start site region 6343
Tssr6344 1 38019149 to 38019163 14 + TSS region transcription start site region 6344
Tssr6345 1 38019168 to 38019192 24 + TSS region transcription start site region 6345
Tssr6346 1 38019231 to 38019243 12 + TSS region transcription start site region 6346
Tssr6347 1 38019261 to 38019280 19 + TSS region transcription start site region 6347
Tssr6348 1 38019409 to 38019420 11 + TSS region transcription start site region 6348
Tssr6349 1 38019448 to 38019482 34 + TSS region transcription start site region 6349
Tssr6350 1 38021667 to 38021686 19 + TSS region transcription start site region 6350
Tssr6351 1 38021704 to 38021722 18 + TSS region transcription start site region 6351
Tssr6352 1 38021730 to 38021743 13 + TSS region transcription start site region 6352
Tssr6353 1 38021753 to 38021788 35 + TSS region transcription start site region 6353
Tssr11327 1 38022187 to 38022205 18 - TSS region transcription start site region 11327
Tssr6354 1 38022234 to 38022254 20 + TSS region transcription start site region 6354
Tssr6355 1 38022273 to 38022293 20 + TSS region transcription start site region 6355
Gm34448 1 38023490 to 38032277 8787 - lncRNA gene predicted gene, 34448
Tssr6356 1 38032270 to 38032289 19 + TSS region transcription start site region 6356
Tssr6357 1 38034065 to 38034076 11 + TSS region transcription start site region 6357
Tssr6358 1 38035693 to 38035705 12 + TSS region transcription start site region 6358
Tssr6359 1 38035709 to 38035716 7 + TSS region transcription start site region 6359
Tssr6360 1 38035740 to 38035749 9 + TSS region transcription start site region 6360
Tssr6361 1 38035757 to 38035771 14 + TSS region transcription start site region 6361
Tssr6362 1 38035781 to 38035822 41 + TSS region transcription start site region 6362
Tssr6363 1 38042777 to 38042791 14 + TSS region transcription start site region 6363
Tssr6364 1 38049243 to 38049264 21 + TSS region transcription start site region 6364
Rev1 1 38052786 to 38129801 77015 - protein coding gene REV1, DNA directed polymerase
Tssr11328 1 38060586 to 38060590 4 - TSS region transcription start site region 11328
Gm37062 1 38076295 to 38077305 1010 - lncRNA gene predicted gene, 37062
Syncq1 1 38094000 to 38932000 838000 QTL synovial calcification QTL 1
Tssr11329 1 38106830 to 38106831 1 - TSS region transcription start site region 11329
Tssr11330 1 38112149 to 38112153 4 - TSS region transcription start site region 11330
Tssr11331 1 38121045 to 38121049 4 - TSS region transcription start site region 11331
Cpgi173 1 38128850 to 38130543 1693 CpG island CpG island 173
Tssr11332 1 38129618 to 38129679 61 - TSS region transcription start site region 11332
Tssr11333 1 38129719 to 38129801 82 - TSS region transcription start site region 11333
Gm5099 1 38132083 to 38159892 27809 + lncRNA gene predicted gene 5099
Aff3 1 38175393 to 38630178 454785 - protein coding gene AF4/FMR2 family, member 3
Cpgi174 1 38209955 to 38210526 571 CpG island CpG island 174
Cpgi175 1 38218186 to 38218449 263 CpG island CpG island 175