Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:37539104-37900284

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat4a 1 37439340 to 37541016 101676 - protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme A
Cpgi163 1 37540287 to 37541527 1240 CpG island CpG island 163
Tssr11308 1 37540980 to 37540992 12 - TSS region transcription start site region 11308
Tssr11309 1 37541003 to 37541046 43 - TSS region transcription start site region 11309
Tssr6315 1 37541209 to 37541212 3 + TSS region transcription start site region 6315
Tssr11310 1 37559799 to 37559812 13 - TSS region transcription start site region 11310
Tssr47 1 37580151 to 37580153 2 + TSS region transcription start site region 47
Tssr48 1 37584217 to 37584220 3 + TSS region transcription start site region 48
Tssr6316 1 37603593 to 37603595 2 + TSS region transcription start site region 6316
D1Dcr52 1 37603667 to 37603762 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 52
2010300C02Rik 1 37611677 to 37720085 108408 - protein coding gene RIKEN cDNA 2010300C02 gene
Cpgi164 1 37614230 to 37614441 211 CpG island CpG island 164
Tssr6317 1 37614409 to 37614420 11 + TSS region transcription start site region 6317
Tssr6318 1 37614439 to 37614449 10 + TSS region transcription start site region 6318
4930556I23Rik 1 37614507 to 37615373 866 + antisense lncRNA gene RIKEN cDNA 4930556I23 gene
D1Mit245 1 37621937 to 37622077 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 245
D1Dcr53 1 37642618 to 37642718 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 53
4930470B04Rik 1 37660722 to 37662647 1925 + lncRNA gene RIKEN cDNA 4930470B04 gene
Tssr6319 1 37660740 to 37660750 10 + TSS region transcription start site region 6319
Tssr6320 1 37660769 to 37660787 18 + TSS region transcription start site region 6320
Tssr6321 1 37660792 to 37660798 6 + TSS region transcription start site region 6321
Tssr11311 1 37665694 to 37665715 21 - TSS region transcription start site region 11311
Gm39628 1 37684600 to 37696393 11793 + lncRNA gene predicted gene, 39628
Cpgi165 1 37687115 to 37687538 423 CpG island CpG island 165
Tssr6322 1 37687337 to 37687350 13 + TSS region transcription start site region 6322
Tssr11312 1 37691523 to 37691526 3 - TSS region transcription start site region 11312
Gm19863 1 37694447 to 37696664 2217 - unclassified gene predicted gene, 19863
Tssr11313 1 37712757 to 37712766 9 - TSS region transcription start site region 11313
Cpgi166 1 37719104 to 37720284 1180 CpG island CpG island 166
Tssr11314 1 37719782 to 37719899 117 - TSS region transcription start site region 11314
Tsga10 1 37754776 to 37866429 111653 - protein coding gene testis specific 10
Tssr11315 1 37755423 to 37755426 3 - TSS region transcription start site region 11315
Cpgi167 1 37864480 to 37865628 1148 CpG island CpG island 167
Tssr11316 1 37864801 to 37864813 12 - TSS region transcription start site region 11316
Tssr11317 1 37865040 to 37865116 76 - TSS region transcription start site region 11317
Tssr11318 1 37865128 to 37865139 11 - TSS region transcription start site region 11318
Gm26805 1 37865299 to 37871388 6089 + antisense lncRNA gene predicted gene, 26805
Lipt1 1 37871738 to 37876228 4490 + protein coding gene lipoyltransferase 1
Tssr6323 1 37872208 to 37872233 25 + TSS region transcription start site region 6323
Cpgi168 1 37872271 to 37872621 350 CpG island CpG island 168
Tssr6324 1 37872333 to 37872371 38 + TSS region transcription start site region 6324
Cpgi169 1 37875259 to 37875842 583 CpG island CpG island 169
Mitd1 1 37878888 to 37890442 11554 - protein coding gene MIT, microtubule interacting and transport, domain containing 1
Tssr6325 1 37886360 to 37886364 4 + TSS region transcription start site region 6325
Cpgi170 1 37890086 to 37890787 701 CpG island CpG island 170
Tssr11319 1 37890310 to 37890324 14 - TSS region transcription start site region 11319
Tssr11320 1 37890333 to 37890416 83 - TSS region transcription start site region 11320
Mrpl30 1 37890471 to 37898338 7867 + protein coding gene mitochondrial ribosomal protein L30
Tssr6326 1 37890519 to 37890542 23 + TSS region transcription start site region 6326
Tssr6327 1 37897850 to 37897853 3 + TSS region transcription start site region 6327