Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:37257956-38737963

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnga3 1 37218241 to 37263384 45143 + protein coding gene cyclic nucleotide gated channel alpha 3
Cpgi160 1 37261278 to 37261487 209 CpG island CpG island 160
1700074A21Rik 1 37299352 to 37299697 345 - unclassified gene RIKEN cDNA 1700074A21 gene
Cpgi161 1 37299643 to 37300586 943 CpG island CpG island 161
Tssr6305 1 37299859 to 37299870 11 + TSS region transcription start site region 6305
Inpp4a 1 37299865 to 37410736 110871 + protein coding gene inositol polyphosphate-4-phosphatase, type I
Tssr6306 1 37299882 to 37299937 55 + TSS region transcription start site region 6306
4930439A04Rik 1 37329667 to 37334172 4505 - antisense lncRNA gene RIKEN cDNA 4930439A04 gene
Gm37135 1 37330971 to 37331504 533 - unclassified gene predicted gene, 37135
Tssr11295 1 37334169 to 37334179 10 - TSS region transcription start site region 11295
Tssr46 1 37344354 to 37344366 12 - TSS region transcription start site region 46
Tssr6307 1 37400368 to 37400372 4 + TSS region transcription start site region 6307
Tssr6308 1 37408827 to 37408872 45 + TSS region transcription start site region 6308
Tssr6309 1 37409618 to 37409622 4 + TSS region transcription start site region 6309
Coa5 1 37417085 to 37430103 13018 - protein coding gene cytochrome C oxidase assembly factor 5
Tssr11296 1 37418809 to 37418838 29 - TSS region transcription start site region 11296
Tssr11297 1 37418896 to 37418911 15 - TSS region transcription start site region 11297
Cpgi162 1 37429568 to 37430833 1265 CpG island CpG island 162
Tssr11298 1 37429989 to 37430000 11 - TSS region transcription start site region 11298
Tssr11299 1 37430010 to 37430015 5 - TSS region transcription start site region 11299
Tssr11300 1 37430016 to 37430057 41 - TSS region transcription start site region 11300
Tssr11301 1 37430071 to 37430080 9 - TSS region transcription start site region 11301
Unc50 1 37430139 to 37439124 8985 + protein coding gene unc-50 homolog
Tssr6310 1 37430155 to 37430220 65 + TSS region transcription start site region 6310
Tssr6311 1 37430335 to 37430348 13 + TSS region transcription start site region 6311
Mgat4a 1 37439340 to 37541016 101676 - protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme A
Tssr11302 1 37475455 to 37475458 3 - TSS region transcription start site region 11302
4930594C11Rik 1 37485851 to 37488605 2754 - pseudogene RIKEN cDNA 4930594C11 gene
Gm43213 1 37487193 to 37488982 1789 - pseudogene predicted gene 43213
Tssr11303 1 37488628 to 37488650 22 - TSS region transcription start site region 11303
Tssr6312 1 37491973 to 37491989 16 + TSS region transcription start site region 6312
Tssr6313 1 37494575 to 37494589 14 + TSS region transcription start site region 6313
Tssr6314 1 37494597 to 37494604 7 + TSS region transcription start site region 6314
Tssr11304 1 37496089 to 37496106 17 - TSS region transcription start site region 11304
Tssr11305 1 37496122 to 37496156 34 - TSS region transcription start site region 11305
Gm39627 1 37499037 to 37499941 904 - lncRNA gene predicted gene, 39627
Tssr11306 1 37519184 to 37519199 15 - TSS region transcription start site region 11306
D1Mit244 1 37530551 to 37530683 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 244
Tssr11307 1 37536232 to 37536236 4 - TSS region transcription start site region 11307
Cpgi163 1 37540287 to 37541527 1240 CpG island CpG island 163
Tssr11308 1 37540980 to 37540992 12 - TSS region transcription start site region 11308
Tssr11309 1 37541003 to 37541046 43 - TSS region transcription start site region 11309
Tssr6315 1 37541209 to 37541212 3 + TSS region transcription start site region 6315
Tssr11310 1 37559799 to 37559812 13 - TSS region transcription start site region 11310
Tssr47 1 37580151 to 37580153 2 + TSS region transcription start site region 47
Tssr48 1 37584217 to 37584220 3 + TSS region transcription start site region 48
Tssr6316 1 37603593 to 37603595 2 + TSS region transcription start site region 6316
D1Dcr52 1 37603667 to 37603762 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 52
2010300C02Rik 1 37611677 to 37720085 108408 - protein coding gene RIKEN cDNA 2010300C02 gene
Cpgi164 1 37614230 to 37614441 211 CpG island CpG island 164
Tssr6317 1 37614409 to 37614420 11 + TSS region transcription start site region 6317
Tssr6318 1 37614439 to 37614449 10 + TSS region transcription start site region 6318
4930556I23Rik 1 37614507 to 37615373 866 + antisense lncRNA gene RIKEN cDNA 4930556I23 gene
D1Mit245 1 37621937 to 37622077 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 245
D1Dcr53 1 37642618 to 37642718 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 53
4930470B04Rik 1 37660722 to 37662647 1925 + lncRNA gene RIKEN cDNA 4930470B04 gene
Tssr6319 1 37660740 to 37660750 10 + TSS region transcription start site region 6319
Tssr6320 1 37660769 to 37660787 18 + TSS region transcription start site region 6320
Tssr6321 1 37660792 to 37660798 6 + TSS region transcription start site region 6321
Tssr11311 1 37665694 to 37665715 21 - TSS region transcription start site region 11311
Gm39628 1 37684600 to 37696393 11793 + lncRNA gene predicted gene, 39628
Cpgi165 1 37687115 to 37687538 423 CpG island CpG island 165
Tssr6322 1 37687337 to 37687350 13 + TSS region transcription start site region 6322
Tssr11312 1 37691523 to 37691526 3 - TSS region transcription start site region 11312
Gm19863 1 37694447 to 37696664 2217 - unclassified gene predicted gene, 19863
Tssr11313 1 37712757 to 37712766 9 - TSS region transcription start site region 11313
Cpgi166 1 37719104 to 37720284 1180 CpG island CpG island 166
Tssr11314 1 37719782 to 37719899 117 - TSS region transcription start site region 11314
Tsga10 1 37754776 to 37866429 111653 - protein coding gene testis specific 10
Tssr11315 1 37755423 to 37755426 3 - TSS region transcription start site region 11315
Cpgi167 1 37864480 to 37865628 1148 CpG island CpG island 167
Tssr11316 1 37864801 to 37864813 12 - TSS region transcription start site region 11316
Tssr11317 1 37865040 to 37865116 76 - TSS region transcription start site region 11317
Tssr11318 1 37865128 to 37865139 11 - TSS region transcription start site region 11318
Gm26805 1 37865299 to 37871388 6089 + antisense lncRNA gene predicted gene, 26805
Lipt1 1 37871738 to 37876228 4490 + protein coding gene lipoyltransferase 1
Tssr6323 1 37872208 to 37872233 25 + TSS region transcription start site region 6323
Cpgi168 1 37872271 to 37872621 350 CpG island CpG island 168
Tssr6324 1 37872333 to 37872371 38 + TSS region transcription start site region 6324
Cpgi169 1 37875259 to 37875842 583 CpG island CpG island 169
Mitd1 1 37878888 to 37890442 11554 - protein coding gene MIT, microtubule interacting and transport, domain containing 1
Tssr6325 1 37886360 to 37886364 4 + TSS region transcription start site region 6325
Cpgi170 1 37890086 to 37890787 701 CpG island CpG island 170
Tssr11319 1 37890310 to 37890324 14 - TSS region transcription start site region 11319
Tssr11320 1 37890333 to 37890416 83 - TSS region transcription start site region 11320
Mrpl30 1 37890471 to 37898338 7867 + protein coding gene mitochondrial ribosomal protein L30
Tssr6326 1 37890519 to 37890542 23 + TSS region transcription start site region 6326
Tssr6327 1 37897850 to 37897853 3 + TSS region transcription start site region 6327
Lyg2 1 37905923 to 37916493 10570 - protein coding gene lysozyme G-like 2
Tssr11321 1 37916412 to 37916426 14 - TSS region transcription start site region 11321
Tssr11322 1 37916485 to 37916499 14 - TSS region transcription start site region 11322
Gm15457 1 37933596 to 37954136 20540 + antisense lncRNA gene predicted gene 15457
Lyg1 1 37946738 to 37957759 11021 - protein coding gene lysozyme G-like 1
Tssr11323 1 37957757 to 37957760 3 - TSS region transcription start site region 11323
D1Mit518 1 37966284 to 37966435 151 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-518
Gm23409 1 37973967 to 37974203 236 + unclassified non-coding RNA gene predicted gene, 23409
Txndc9 1 37985189 to 37997893 12704 - protein coding gene thioredoxin domain containing 9
Cpgi171 1 37996845 to 37997498 653 CpG island CpG island 171
Tssr11324 1 37996919 to 37996950 31 - TSS region transcription start site region 11324
Tssr11325 1 37996961 to 37996976 15 - TSS region transcription start site region 11325
Tssr11326 1 37997219 to 37997280 61 - TSS region transcription start site region 11326
Cpgi172 1 37997809 to 37998727 918 CpG island CpG island 172
Tssr6328 1 37997956 to 37997963 7 + TSS region transcription start site region 6328
Tssr6329 1 37997975 to 37997986 11 + TSS region transcription start site region 6329
Tssr49 1 37997987 to 37997994 7 + TSS region transcription start site region 49
Tssr6330 1 37998005 to 37998014 9 + TSS region transcription start site region 6330
Eif5b 1 37998010 to 38055579 57569 + protein coding gene eukaryotic translation initiation factor 5B
Tssr6331 1 37998097 to 37998114 17 + TSS region transcription start site region 6331
Tssr6332 1 37998115 to 37998149 34 + TSS region transcription start site region 6332
Tssr6333 1 37998152 to 37998165 13 + TSS region transcription start site region 6333
Tssr50 1 37998187 to 37998199 12 + TSS region transcription start site region 50
Tssr51 1 37998255 to 37998273 18 + TSS region transcription start site region 51
Tssr52 1 37998294 to 37998297 3 + TSS region transcription start site region 52
Tssr6334 1 37998774 to 37998777 3 + TSS region transcription start site region 6334
B230213L16Rik 1 38013853 to 38016924 3071 protein coding gene RIKEN cDNA B230213L16 gene
Tssr6335 1 38017848 to 38017862 14 + TSS region transcription start site region 6335
Tssr6336 1 38017865 to 38017877 12 + TSS region transcription start site region 6336
Tssr6337 1 38018046 to 38018060 14 + TSS region transcription start site region 6337
Tssr6338 1 38018067 to 38018084 17 + TSS region transcription start site region 6338
Tssr6339 1 38018979 to 38019023 44 + TSS region transcription start site region 6339
Tssr6340 1 38019027 to 38019049 22 + TSS region transcription start site region 6340
Tssr6341 1 38019068 to 38019081 13 + TSS region transcription start site region 6341
Tssr6342 1 38019098 to 38019109 11 + TSS region transcription start site region 6342
Tssr6343 1 38019115 to 38019127 12 + TSS region transcription start site region 6343
Tssr6344 1 38019149 to 38019163 14 + TSS region transcription start site region 6344
Tssr6345 1 38019168 to 38019192 24 + TSS region transcription start site region 6345
Tssr6346 1 38019231 to 38019243 12 + TSS region transcription start site region 6346
Tssr6347 1 38019261 to 38019280 19 + TSS region transcription start site region 6347
Tssr6348 1 38019409 to 38019420 11 + TSS region transcription start site region 6348
Tssr6349 1 38019448 to 38019482 34 + TSS region transcription start site region 6349
Tssr6350 1 38021667 to 38021686 19 + TSS region transcription start site region 6350
Tssr6351 1 38021704 to 38021722 18 + TSS region transcription start site region 6351
Tssr6352 1 38021730 to 38021743 13 + TSS region transcription start site region 6352
Tssr6353 1 38021753 to 38021788 35 + TSS region transcription start site region 6353
Tssr11327 1 38022187 to 38022205 18 - TSS region transcription start site region 11327
Tssr6354 1 38022234 to 38022254 20 + TSS region transcription start site region 6354
Tssr6355 1 38022273 to 38022293 20 + TSS region transcription start site region 6355
Gm34448 1 38023490 to 38030460 6970 - lncRNA gene predicted gene, 34448
Tssr6356 1 38032270 to 38032289 19 + TSS region transcription start site region 6356
Tssr6357 1 38034065 to 38034076 11 + TSS region transcription start site region 6357
Tssr6358 1 38035693 to 38035705 12 + TSS region transcription start site region 6358
Tssr6359 1 38035709 to 38035716 7 + TSS region transcription start site region 6359
Tssr6360 1 38035740 to 38035749 9 + TSS region transcription start site region 6360
Tssr6361 1 38035757 to 38035771 14 + TSS region transcription start site region 6361
Tssr6362 1 38035781 to 38035822 41 + TSS region transcription start site region 6362
Tssr6363 1 38042777 to 38042791 14 + TSS region transcription start site region 6363
Tssr6364 1 38049243 to 38049264 21 + TSS region transcription start site region 6364
Rev1 1 38052786 to 38129801 77015 - protein coding gene REV1, DNA directed polymerase
Tssr11328 1 38060586 to 38060590 4 - TSS region transcription start site region 11328
Gm37062 1 38076295 to 38077305 1010 - sense intronic lncRNA gene predicted gene, 37062
Tssr11329 1 38106830 to 38106831 1 - TSS region transcription start site region 11329
Tssr11330 1 38112149 to 38112153 4 - TSS region transcription start site region 11330
Tssr11331 1 38121045 to 38121049 4 - TSS region transcription start site region 11331
Cpgi173 1 38128850 to 38130543 1693 CpG island CpG island 173
Tssr11332 1 38129618 to 38129679 61 - TSS region transcription start site region 11332
Tssr11333 1 38129719 to 38129801 82 - TSS region transcription start site region 11333
Gm5099 1 38144023 to 38159892 15869 + lincRNA gene predicted gene 5099
Aff3 1 38175393 to 38628333 452940 - protein coding gene AF4/FMR2 family, member 3
Cpgi174 1 38209955 to 38210526 571 CpG island CpG island 174
Cpgi175 1 38218186 to 38218449 263 CpG island CpG island 175
Gm16150 1 38235420 to 38246666 11246 + antisense lncRNA gene predicted gene 16150
Cpgi176 1 38239554 to 38239792 238 CpG island CpG island 176
5330403D14Rik 1 38247931 to 38249269 1338 unclassified gene RIKEN cDNA 5330403D14 gene
6030495B02Rik 1 38305465 to 38308429 2964 unclassified gene RIKEN cDNA 6030495B02 gene
Gm16151 1 38307902 to 38311930 4028 + antisense lncRNA gene predicted gene 16151
Tssr11334 1 38320259 to 38320272 13 - TSS region transcription start site region 11334
Tssr11335 1 38321981 to 38321997 16 - TSS region transcription start site region 11335
2900002H24Rik 1 38322245 to 38322498 253 unclassified gene RIKEN cDNA 2900002H24 gene
Cpgi177 1 38358854 to 38359432 578 CpG island CpG island 177
Gm16152 1 38384949 to 38393974 9025 + antisense lncRNA gene predicted gene 16152
Tssr53 1 38393972 to 38393975 3 - TSS region transcription start site region 53
Tssr11336 1 38472450 to 38472453 3 - TSS region transcription start site region 11336
Gm34727 1 38487519 to 38488047 528 + pseudogene predicted gene, 34727
Tssr11337 1 38491806 to 38491810 4 - TSS region transcription start site region 11337
D1Dcr26 1 38528672 to 38528767 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 26
D1Dcr27 1 38541472 to 38541568 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 27
D1Mit321 1 38541478 to 38541608 130 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 321
2310050P20Rik 1 38554284 to 38556376 2092 unclassified gene RIKEN cDNA 2310050P20 gene
Tssr11338 1 38603922 to 38603925 3 - TSS region transcription start site region 11338
Tssr11339 1 38615538 to 38615542 4 - TSS region transcription start site region 11339
Cpgi178 1 38626448 to 38628304 1856 CpG island CpG island 178
Tssr11340 1 38627415 to 38627467 52 - TSS region transcription start site region 11340
Tssr11341 1 38627538 to 38627549 11 - TSS region transcription start site region 11341
Tssr11342 1 38627569 to 38627582 13 - TSS region transcription start site region 11342
Tssr11343 1 38627586 to 38627605 19 - TSS region transcription start site region 11343
Tssr11344 1 38628077 to 38628092 15 - TSS region transcription start site region 11344
Gm34596 1 38630667 to 38653368 22701 + lncRNA gene predicted gene, 34596
Tssr11345 1 38638631 to 38638633 2 - TSS region transcription start site region 11345
Tssr11346 1 38664922 to 38664933 11 - TSS region transcription start site region 11346
Tssr11347 1 38664934 to 38664945 11 - TSS region transcription start site region 11347
Tssr11348 1 38664947 to 38665000 53 - TSS region transcription start site region 11348
Tssr11349 1 38665005 to 38665012 7 - TSS region transcription start site region 11349
Tssr11350 1 38665023 to 38665034 11 - TSS region transcription start site region 11350
Tssr11351 1 38665592 to 38665599 7 - TSS region transcription start site region 11351
D1Dcr28 1 38692321 to 38692416 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 28
D1Dcr29 1 38703153 to 38703254 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 29
Tssr54 1 38704065 to 38704072 7 + TSS region transcription start site region 54
Gm38135 1 38722620 to 38723121 501 + pseudogene predicted gene, 38135
D1Dcr30 1 38723559 to 38723655 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 30
Tssr55 1 38725234 to 38725238 4 + TSS region transcription start site region 55