Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:37214575-37774589

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnga3 1 37218241 to 37263384 45143 + protein coding gene cyclic nucleotide gated channel alpha 3
Cpgi159 1 37218594 to 37218855 261 CpG island CpG island 159
Tssr6302 1 37219191 to 37219201 10 + TSS region transcription start site region 6302
Tssr6303 1 37246709 to 37246717 8 + TSS region transcription start site region 6303
Tssr6304 1 37246742 to 37246751 9 + TSS region transcription start site region 6304
Cpgi160 1 37261278 to 37261487 209 CpG island CpG island 160
1700074A21Rik 1 37299352 to 37299697 345 - unclassified gene RIKEN cDNA 1700074A21 gene
Cpgi161 1 37299643 to 37300586 943 CpG island CpG island 161
Tssr6305 1 37299859 to 37299870 11 + TSS region transcription start site region 6305
Inpp4a 1 37299865 to 37410736 110871 + protein coding gene inositol polyphosphate-4-phosphatase, type I
Tssr6306 1 37299882 to 37299937 55 + TSS region transcription start site region 6306
4930439A04Rik 1 37329667 to 37334172 4505 - antisense lncRNA gene RIKEN cDNA 4930439A04 gene
Gm37135 1 37330971 to 37331504 533 - unclassified gene predicted gene, 37135
Tssr11295 1 37334169 to 37334179 10 - TSS region transcription start site region 11295
Tssr46 1 37344354 to 37344366 12 - TSS region transcription start site region 46
Tssr6307 1 37400368 to 37400372 4 + TSS region transcription start site region 6307
Tssr6308 1 37408827 to 37408872 45 + TSS region transcription start site region 6308
Tssr6309 1 37409618 to 37409622 4 + TSS region transcription start site region 6309
Coa5 1 37417085 to 37430103 13018 - protein coding gene cytochrome C oxidase assembly factor 5
Tssr11296 1 37418809 to 37418838 29 - TSS region transcription start site region 11296
Tssr11297 1 37418896 to 37418911 15 - TSS region transcription start site region 11297
Cpgi162 1 37429568 to 37430833 1265 CpG island CpG island 162
Tssr11298 1 37429989 to 37430000 11 - TSS region transcription start site region 11298
Tssr11299 1 37430010 to 37430015 5 - TSS region transcription start site region 11299
Tssr11300 1 37430016 to 37430057 41 - TSS region transcription start site region 11300
Tssr11301 1 37430071 to 37430080 9 - TSS region transcription start site region 11301
Unc50 1 37430139 to 37439124 8985 + protein coding gene unc-50 homolog
Tssr6310 1 37430155 to 37430220 65 + TSS region transcription start site region 6310
Tssr6311 1 37430335 to 37430348 13 + TSS region transcription start site region 6311
Mgat4a 1 37439340 to 37541016 101676 - protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme A
Tssr11302 1 37475455 to 37475458 3 - TSS region transcription start site region 11302
4930594C11Rik 1 37485851 to 37488605 2754 - pseudogene RIKEN cDNA 4930594C11 gene
Gm43213 1 37487193 to 37488982 1789 - pseudogene predicted gene 43213
Tssr11303 1 37488628 to 37488650 22 - TSS region transcription start site region 11303
Tssr6312 1 37491973 to 37491989 16 + TSS region transcription start site region 6312
Tssr6313 1 37494575 to 37494589 14 + TSS region transcription start site region 6313
Tssr6314 1 37494597 to 37494604 7 + TSS region transcription start site region 6314
Tssr11304 1 37496089 to 37496106 17 - TSS region transcription start site region 11304
Tssr11305 1 37496122 to 37496156 34 - TSS region transcription start site region 11305
Gm39627 1 37499037 to 37499941 904 - lncRNA gene predicted gene, 39627
Tssr11306 1 37519184 to 37519199 15 - TSS region transcription start site region 11306
D1Mit244 1 37530551 to 37530683 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 244
Tssr11307 1 37536232 to 37536236 4 - TSS region transcription start site region 11307
Cpgi163 1 37540287 to 37541527 1240 CpG island CpG island 163
Tssr11308 1 37540980 to 37540992 12 - TSS region transcription start site region 11308
Tssr11309 1 37541003 to 37541046 43 - TSS region transcription start site region 11309
Tssr6315 1 37541209 to 37541212 3 + TSS region transcription start site region 6315
Tssr11310 1 37559799 to 37559812 13 - TSS region transcription start site region 11310
Tssr47 1 37580151 to 37580153 2 + TSS region transcription start site region 47
Tssr48 1 37584217 to 37584220 3 + TSS region transcription start site region 48
Tssr6316 1 37603593 to 37603595 2 + TSS region transcription start site region 6316
D1Dcr52 1 37603667 to 37603762 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 52
2010300C02Rik 1 37611677 to 37720085 108408 - protein coding gene RIKEN cDNA 2010300C02 gene
Cpgi164 1 37614230 to 37614441 211 CpG island CpG island 164
Tssr6317 1 37614409 to 37614420 11 + TSS region transcription start site region 6317
Tssr6318 1 37614439 to 37614449 10 + TSS region transcription start site region 6318
4930556I23Rik 1 37614507 to 37615373 866 + antisense lncRNA gene RIKEN cDNA 4930556I23 gene
D1Mit245 1 37621937 to 37622077 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 245
D1Dcr53 1 37642618 to 37642718 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 53
4930470B04Rik 1 37660722 to 37662647 1925 + lncRNA gene RIKEN cDNA 4930470B04 gene
Tssr6319 1 37660740 to 37660750 10 + TSS region transcription start site region 6319
Tssr6320 1 37660769 to 37660787 18 + TSS region transcription start site region 6320
Tssr6321 1 37660792 to 37660798 6 + TSS region transcription start site region 6321
Tssr11311 1 37665694 to 37665715 21 - TSS region transcription start site region 11311
Gm39628 1 37684600 to 37696393 11793 + lncRNA gene predicted gene, 39628
Cpgi165 1 37687115 to 37687538 423 CpG island CpG island 165
Tssr6322 1 37687337 to 37687350 13 + TSS region transcription start site region 6322
Tssr11312 1 37691523 to 37691526 3 - TSS region transcription start site region 11312
Gm19863 1 37694447 to 37696664 2217 - unclassified gene predicted gene, 19863
Tssr11313 1 37712757 to 37712766 9 - TSS region transcription start site region 11313
Cpgi166 1 37719104 to 37720284 1180 CpG island CpG island 166
Tssr11314 1 37719782 to 37719899 117 - TSS region transcription start site region 11314
Tsga10 1 37754776 to 37866429 111653 - protein coding gene testis specific 10
Tssr11315 1 37755423 to 37755426 3 - TSS region transcription start site region 11315