Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36512692-36733183

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cpgi144	1	36511399 to 36513213	1814		CpG island	CpG island 144
Cnnm3	1	36511867 to 36528237	16370	+	protein coding gene	cyclin M3
Gm38033	1	36527534 to 36528237	703	-	antisense lncRNA gene	predicted gene, 38033
Ankrd23	1	36530193 to 36536556	6363	-	protein coding gene	ankyrin repeat domain 23
Gm42417	1	36530193 to 36539429	9236	-	protein coding gene	predicted gene, 42417
Tssr11259	1	36534727 to 36534734	7	-	TSS region	transcription start site region 11259
Tssr11260	1	36535719 to 36535764	45	-	TSS region	transcription start site region 11260
Ankrd39	1	36538171 to 36547440	9269	-	protein coding gene	ankyrin repeat domain 39
Cpgi145	1	36541798 to 36542132	334		CpG island	CpG island 145
Cpgi146	1	36546768 to 36547643	875		CpG island	CpG island 146
Tssr11261	1	36547194 to 36547233	39	-	TSS region	transcription start site region 11261
Sema4c	1	36548639 to 36558349	9710	-	protein coding gene	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Cpgi147	1	36552687 to 36553048	361		CpG island	CpG island 147
Cpgi148	1	36556599 to 36558926	2327		CpG island	CpG island 148
Tssr11262	1	36556661 to 36556691	30	-	TSS region	transcription start site region 11262
Tssr11263	1	36557517 to 36557561	44	-	TSS region	transcription start site region 11263
Tssr40	1	36557695 to 36557731	36	+	TSS region	transcription start site region 40
D430040D24Rik	1	36557701 to 36565613	7912	+	unclassified non-coding RNA gene	RIKEN cDNA D430040D24 gene
Tssr11264	1	36558182 to 36558212	30	-	TSS region	transcription start site region 11264
Tssr11265	1	36558214 to 36558266	52	-	TSS region	transcription start site region 11265
Tssr11266	1	36558350 to 36558366	16	-	TSS region	transcription start site region 11266
Fam178b	1	36562692 to 36683183	120491	-	protein coding gene	family with sequence similarity 178, member B
Tssr11267	1	36565611 to 36565613	2	-	TSS region	transcription start site region 11267
Tssr11268	1	36593315 to 36593338	23	-	TSS region	transcription start site region 11268
Gm6428	1	36601802 to 36602146	344	+	pseudogene	predicted pseudogene 6428
Tssr11269	1	36643977 to 36644008	31	-	TSS region	transcription start site region 11269
Gm24133	1	36663965 to 36664039	74	+	miRNA gene	predicted gene, 24133
Cpgi149	1	36682795 to 36683473	678		CpG island	CpG island 149
Tssr11270	1	36683097 to 36683108	11	-	TSS region	transcription start site region 11270
Tssr11271	1	36683115 to 36683154	39	-	TSS region	transcription start site region 11271
Cpgi150	1	36691155 to 36692212	1057		CpG island	CpG island 150
Cox5b	1	36691487 to 36693388	1901	+	protein coding gene	cytochrome c oxidase subunit 5B
Tssr6272	1	36691530 to 36691554	24	+	TSS region	transcription start site region 6272
Tssr41	1	36698495 to 36698496	1	+	TSS region	transcription start site region 41
Actr1b	1	36699200 to 36710017	10817	-	protein coding gene	ARP1 actin-related protein 1B, centractin beta
Tssr11272	1	36699774 to 36699778	4	-	TSS region	transcription start site region 11272
Tssr11273	1	36699909 to 36699933	24	-	TSS region	transcription start site region 11273
Tssr11274	1	36702158 to 36702185	27	-	TSS region	transcription start site region 11274
Tssr6273	1	36702408 to 36702409	1	+	TSS region	transcription start site region 6273
Cpgi151	1	36709514 to 36710223	709		CpG island	CpG island 151
Tssr11275	1	36709904 to 36709978	74	-	TSS region	transcription start site region 11275
Tssr6274	1	36714524 to 36714576	52	+	TSS region	transcription start site region 6274
4933424G06Rik	1	36714538 to 36757960	43422	+	lncRNA gene	RIKEN cDNA 4933424G06 gene