Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36500439-37510557

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnnm4 1 36471620 to 36508764 37144 + protein coding gene cyclin M4
Gm47280 1 36506562 to 36506702 140 + miRNA gene predicted gene, 47280
Tssr6270 1 36506858 to 36506862 4 + TSS region transcription start site region 6270
Cpgi144 1 36511399 to 36513213 1814 CpG island CpG island 144
Cnnm3 1 36511867 to 36528237 16370 + protein coding gene cyclin M3
Tssr6271 1 36511868 to 36511903 35 + TSS region transcription start site region 6271
Gm38033 1 36527534 to 36528237 703 - antisense lncRNA gene predicted gene, 38033
Gm42417 1 36530193 to 36539429 9236 - protein coding gene predicted gene, 42417
Ankrd23 1 36530193 to 36536556 6363 - protein coding gene ankyrin repeat domain 23
Tssr11259 1 36534727 to 36534734 7 - TSS region transcription start site region 11259
Tssr11260 1 36535719 to 36535764 45 - TSS region transcription start site region 11260
Ankrd39 1 36538171 to 36547440 9269 - protein coding gene ankyrin repeat domain 39
Cpgi145 1 36541798 to 36542132 334 CpG island CpG island 145
Cpgi146 1 36546768 to 36547643 875 CpG island CpG island 146
Tssr11261 1 36547194 to 36547233 39 - TSS region transcription start site region 11261
Sema4c 1 36548639 to 36558349 9710 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Cpgi147 1 36552687 to 36553048 361 CpG island CpG island 147
Cpgi148 1 36556599 to 36558926 2327 CpG island CpG island 148
Tssr11262 1 36556661 to 36556691 30 - TSS region transcription start site region 11262
Tssr11263 1 36557517 to 36557561 44 - TSS region transcription start site region 11263
Tssr40 1 36557695 to 36557731 36 + TSS region transcription start site region 40
D430040D24Rik 1 36557701 to 36565613 7912 + unclassified non-coding RNA gene RIKEN cDNA D430040D24 gene
Tssr11264 1 36558182 to 36558212 30 - TSS region transcription start site region 11264
Tssr11265 1 36558214 to 36558266 52 - TSS region transcription start site region 11265
Tssr11266 1 36558350 to 36558366 16 - TSS region transcription start site region 11266
Fam178b 1 36562692 to 36683183 120491 - protein coding gene family with sequence similarity 178, member B
Tssr11267 1 36565611 to 36565613 2 - TSS region transcription start site region 11267
Tssr11268 1 36593315 to 36593338 23 - TSS region transcription start site region 11268
Gm6428 1 36601802 to 36602146 344 + pseudogene predicted pseudogene 6428
Tssr11269 1 36643977 to 36644008 31 - TSS region transcription start site region 11269
Gm24133 1 36663965 to 36664039 74 + miRNA gene predicted gene, 24133
Cpgi149 1 36682795 to 36683473 678 CpG island CpG island 149
Tssr11270 1 36683097 to 36683108 11 - TSS region transcription start site region 11270
Tssr11271 1 36683115 to 36683154 39 - TSS region transcription start site region 11271
Cpgi150 1 36691155 to 36692212 1057 CpG island CpG island 150
Cox5b 1 36691487 to 36693388 1901 + protein coding gene cytochrome c oxidase subunit 5B
Tssr6272 1 36691530 to 36691554 24 + TSS region transcription start site region 6272
Tssr41 1 36698495 to 36698496 1 + TSS region transcription start site region 41
Actr1b 1 36699200 to 36710017 10817 - protein coding gene ARP1 actin-related protein 1B, centractin beta
Tssr11272 1 36699774 to 36699778 4 - TSS region transcription start site region 11272
Tssr11273 1 36699909 to 36699933 24 - TSS region transcription start site region 11273
Tssr11274 1 36702158 to 36702185 27 - TSS region transcription start site region 11274
Tssr6273 1 36702408 to 36702409 1 + TSS region transcription start site region 6273
Cpgi151 1 36709514 to 36710223 709 CpG island CpG island 151
Tssr11275 1 36709904 to 36709978 74 - TSS region transcription start site region 11275
Tssr6274 1 36714524 to 36714576 52 + TSS region transcription start site region 6274
4933424G06Rik 1 36714538 to 36757960 43422 + lncRNA gene RIKEN cDNA 4933424G06 gene
Gm33533 1 36739048 to 36744792 5744 - lincRNA gene predicted gene, 33533
D1Mit171 1 36743822 to 36743968 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 171
Cpgi152 1 36746597 to 36746785 188 CpG island CpG island 152
Cpgi153 1 36759052 to 36759355 303 CpG island CpG island 153
Tssr6275 1 36761338 to 36761363 25 + TSS region transcription start site region 6275
Tssr6276 1 36761755 to 36761773 18 + TSS region transcription start site region 6276
Tssr6277 1 36761774 to 36761777 3 + TSS region transcription start site region 6277
Tssr6278 1 36761793 to 36761843 50 + TSS region transcription start site region 6278
Zap70 1 36761798 to 36782818 21020 + protein coding gene zeta-chain (TCR) associated protein kinase
Tssr6279 1 36761847 to 36761897 50 + TSS region transcription start site region 6279
Tssr6280 1 36764512 to 36764523 11 + TSS region transcription start site region 6280
Gm18828 1 36765018 to 36765883 865 - pseudogene predicted gene, 18828
Tssr6281 1 36767070 to 36767095 25 + TSS region transcription start site region 6281
Tssr6282 1 36767414 to 36767425 11 + TSS region transcription start site region 6282
Tssr6283 1 36767459 to 36767469 10 + TSS region transcription start site region 6283
Tssr6284 1 36770421 to 36770425 4 + TSS region transcription start site region 6284
Cpgi154 1 36770718 to 36771414 696 CpG island CpG island 154
Tssr6285 1 36771317 to 36771367 50 + TSS region transcription start site region 6285
Cpgi155 1 36779091 to 36779300 209 CpG island CpG island 155
Tssr6286 1 36779946 to 36779952 6 + TSS region transcription start site region 6286
Tssr42 1 36780020 to 36780031 11 + TSS region transcription start site region 42
Tssr6287 1 36780113 to 36780124 11 + TSS region transcription start site region 6287
Tssr6288 1 36781095 to 36781112 17 + TSS region transcription start site region 6288
Cpgi156 1 36785029 to 36785719 690 CpG island CpG island 156
Tmem131 1 36792189 to 36939874 147685 - protein coding gene transmembrane protein 131
Tssr11276 1 36799403 to 36799406 3 - TSS region transcription start site region 11276
Tssr11277 1 36800110 to 36800116 6 - TSS region transcription start site region 11277
Gm37506 1 36871903 to 36872045 142 - unclassified gene predicted gene, 37506
Tssr43 1 36883295 to 36883300 5 + TSS region transcription start site region 43
Tssr11278 1 36891593 to 36891602 9 - TSS region transcription start site region 11278
Tssr11279 1 36891614 to 36891636 22 - TSS region transcription start site region 11279
Tssr11280 1 36891651 to 36891676 25 - TSS region transcription start site region 11280
Tssr11281 1 36891680 to 36891694 14 - TSS region transcription start site region 11281
Tssr11282 1 36892704 to 36892729 25 - TSS region transcription start site region 11282
Tssr6289 1 36903970 to 36903982 12 + TSS region transcription start site region 6289
Tssr6290 1 36903989 to 36903999 10 + TSS region transcription start site region 6290
Gm38115 1 36913601 to 36916539 2938 - sense intronic lncRNA gene predicted gene, 38115
F830112A20Rik 1 36922797 to 36926348 3551 - protein coding gene RIKEN cDNA F830112A20 gene
Tssr11283 1 36932060 to 36932065 5 - TSS region transcription start site region 11283
Cpgi157 1 36938822 to 36940329 1507 CpG island CpG island 157
Tssr11284 1 36939494 to 36939503 9 - TSS region transcription start site region 11284
Tssr11285 1 36939521 to 36939532 11 - TSS region transcription start site region 11285
Tssr11286 1 36939554 to 36939565 11 - TSS region transcription start site region 11286
Tssr11287 1 36939602 to 36939655 53 - TSS region transcription start site region 11287
Tssr11288 1 36939666 to 36939667 1 - TSS region transcription start site region 11288
Tssr6291 1 36939990 to 36940016 26 + TSS region transcription start site region 6291
Tssr11289 1 36943800 to 36943809 9 - TSS region transcription start site region 11289
Tssr11290 1 36943810 to 36943842 32 - TSS region transcription start site region 11290
Rpl12-ps1 1 36957930 to 36958427 497 - pseudogene ribosomal protein L12, pseudogene 1
Tssr11291 1 36958517 to 36958519 2 - TSS region transcription start site region 11291
Tssr6292 1 36983991 to 36984006 15 + TSS region transcription start site region 6292
Tssr6293 1 36984593 to 36984629 36 + TSS region transcription start site region 6293
Tssr11292 1 36985770 to 36985779 9 - TSS region transcription start site region 11292
Tssr11293 1 36985822 to 36985836 14 - TSS region transcription start site region 11293
Tssr6294 1 36986257 to 36986269 12 + TSS region transcription start site region 6294
n-R5s210 1 37005439 to 37005557 118 + rRNA gene nuclear encoded rRNA 5S 210
Vwa3b 1 37028812 to 37187608 158796 + protein coding gene von Willebrand factor A domain containing 3B
Cpgi158 1 37028980 to 37029575 595 CpG island CpG island 158
Tssr6295 1 37029307 to 37029339 32 + TSS region transcription start site region 6295
Tssr6296 1 37029347 to 37029357 10 + TSS region transcription start site region 6296
Gm39626 1 37042567 to 37046351 3784 - lncRNA gene predicted gene, 39626
Tssr44 1 37089658 to 37089660 2 + TSS region transcription start site region 44
Tssr6297 1 37100609 to 37100616 7 + TSS region transcription start site region 6297
Tssr6298 1 37100660 to 37100672 12 + TSS region transcription start site region 6298
Gm37020 1 37132273 to 37133264 991 - antisense lncRNA gene predicted gene, 37020
Tssr45 1 37153822 to 37153825 3 + TSS region transcription start site region 45
Tssr6299 1 37153840 to 37153857 17 + TSS region transcription start site region 6299
Tssr6300 1 37153858 to 37153870 12 + TSS region transcription start site region 6300
Tssr6301 1 37153874 to 37153896 22 + TSS region transcription start site region 6301
Tssr11294 1 37169943 to 37169944 1 - TSS region transcription start site region 11294
D1Ertd799e 1 37197459 to 37197708 249 DNA segment DNA segment, Chr 1, ERATO Doi 799, expressed
Cnga3 1 37218241 to 37263384 45143 + protein coding gene cyclic nucleotide gated channel alpha 3
Cpgi159 1 37218594 to 37218855 261 CpG island CpG island 159
Tssr6302 1 37219191 to 37219201 10 + TSS region transcription start site region 6302
Tssr6303 1 37246709 to 37246717 8 + TSS region transcription start site region 6303
Tssr6304 1 37246742 to 37246751 9 + TSS region transcription start site region 6304
Cpgi160 1 37261278 to 37261487 209 CpG island CpG island 160
1700074A21Rik 1 37299352 to 37299697 345 - unclassified gene RIKEN cDNA 1700074A21 gene
Cpgi161 1 37299643 to 37300586 943 CpG island CpG island 161
Tssr6305 1 37299859 to 37299870 11 + TSS region transcription start site region 6305
Inpp4a 1 37299865 to 37410736 110871 + protein coding gene inositol polyphosphate-4-phosphatase, type I
Tssr6306 1 37299882 to 37299937 55 + TSS region transcription start site region 6306
4930439A04Rik 1 37329667 to 37334172 4505 - antisense lncRNA gene RIKEN cDNA 4930439A04 gene
Gm37135 1 37330971 to 37331504 533 - unclassified gene predicted gene, 37135
Tssr11295 1 37334169 to 37334179 10 - TSS region transcription start site region 11295
Tssr46 1 37344354 to 37344366 12 - TSS region transcription start site region 46
Tssr6307 1 37400368 to 37400372 4 + TSS region transcription start site region 6307
Tssr6308 1 37408827 to 37408872 45 + TSS region transcription start site region 6308
Tssr6309 1 37409618 to 37409622 4 + TSS region transcription start site region 6309
Coa5 1 37417085 to 37430103 13018 - protein coding gene cytochrome C oxidase assembly factor 5
Tssr11296 1 37418809 to 37418838 29 - TSS region transcription start site region 11296
Tssr11297 1 37418896 to 37418911 15 - TSS region transcription start site region 11297
Cpgi162 1 37429568 to 37430833 1265 CpG island CpG island 162
Tssr11298 1 37429989 to 37430000 11 - TSS region transcription start site region 11298
Tssr11299 1 37430010 to 37430015 5 - TSS region transcription start site region 11299
Tssr11300 1 37430016 to 37430057 41 - TSS region transcription start site region 11300
Tssr11301 1 37430071 to 37430080 9 - TSS region transcription start site region 11301
Unc50 1 37430139 to 37439124 8985 + protein coding gene unc-50 homolog
Tssr6310 1 37430155 to 37430220 65 + TSS region transcription start site region 6310
Tssr6311 1 37430335 to 37430348 13 + TSS region transcription start site region 6311
Mgat4a 1 37439340 to 37541016 101676 - protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme A
Tssr11302 1 37475455 to 37475458 3 - TSS region transcription start site region 11302
4930594C11Rik 1 37485851 to 37488605 2754 - pseudogene RIKEN cDNA 4930594C11 gene
Gm43213 1 37487193 to 37488982 1789 - pseudogene predicted gene 43213
Tssr11303 1 37488628 to 37488650 22 - TSS region transcription start site region 11303
Tssr6312 1 37491973 to 37491989 16 + TSS region transcription start site region 6312
Tssr6313 1 37494575 to 37494589 14 + TSS region transcription start site region 6313
Tssr6314 1 37494597 to 37494604 7 + TSS region transcription start site region 6314
Tssr11304 1 37496089 to 37496106 17 - TSS region transcription start site region 11304
Tssr11305 1 37496122 to 37496156 34 - TSS region transcription start site region 11305
Gm39627 1 37499037 to 37499941 904 - lncRNA gene predicted gene, 39627