Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36488965-36839039

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnnm4 1 36471620 to 36508764 37144 + protein coding gene cyclin M4
Tssr6268 1 36490151 to 36490154 3 + TSS region transcription start site region 6268
Tssr6269 1 36492709 to 36492736 27 + TSS region transcription start site region 6269
Gm47280 1 36506562 to 36506702 140 + miRNA gene predicted gene, 47280
Tssr6270 1 36506858 to 36506862 4 + TSS region transcription start site region 6270
Cpgi144 1 36511399 to 36513213 1814 CpG island CpG island 144
Cnnm3 1 36511867 to 36528237 16370 + protein coding gene cyclin M3
Tssr6271 1 36511868 to 36511903 35 + TSS region transcription start site region 6271
Gm38033 1 36527534 to 36528237 703 - antisense lncRNA gene predicted gene, 38033
Ankrd23 1 36530193 to 36536556 6363 - protein coding gene ankyrin repeat domain 23
Gm42417 1 36530193 to 36539429 9236 - protein coding gene predicted gene, 42417
Tssr11259 1 36534727 to 36534734 7 - TSS region transcription start site region 11259
Tssr11260 1 36535719 to 36535764 45 - TSS region transcription start site region 11260
Ankrd39 1 36538171 to 36547440 9269 - protein coding gene ankyrin repeat domain 39
Cpgi145 1 36541798 to 36542132 334 CpG island CpG island 145
Cpgi146 1 36546768 to 36547643 875 CpG island CpG island 146
Tssr11261 1 36547194 to 36547233 39 - TSS region transcription start site region 11261
Sema4c 1 36548639 to 36558349 9710 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Cpgi147 1 36552687 to 36553048 361 CpG island CpG island 147
Cpgi148 1 36556599 to 36558926 2327 CpG island CpG island 148
Tssr11262 1 36556661 to 36556691 30 - TSS region transcription start site region 11262
Tssr11263 1 36557517 to 36557561 44 - TSS region transcription start site region 11263
Tssr40 1 36557695 to 36557731 36 + TSS region transcription start site region 40
D430040D24Rik 1 36557701 to 36565613 7912 + unclassified non-coding RNA gene RIKEN cDNA D430040D24 gene
Tssr11264 1 36558182 to 36558212 30 - TSS region transcription start site region 11264
Tssr11265 1 36558214 to 36558266 52 - TSS region transcription start site region 11265
Tssr11266 1 36558350 to 36558366 16 - TSS region transcription start site region 11266
Fam178b 1 36562692 to 36683183 120491 - protein coding gene family with sequence similarity 178, member B
Tssr11267 1 36565611 to 36565613 2 - TSS region transcription start site region 11267
Tssr11268 1 36593315 to 36593338 23 - TSS region transcription start site region 11268
Gm6428 1 36601802 to 36602146 344 + pseudogene predicted pseudogene 6428
Tssr11269 1 36643977 to 36644008 31 - TSS region transcription start site region 11269
Gm24133 1 36663965 to 36664039 74 + miRNA gene predicted gene, 24133
Cpgi149 1 36682795 to 36683473 678 CpG island CpG island 149
Tssr11270 1 36683097 to 36683108 11 - TSS region transcription start site region 11270
Tssr11271 1 36683115 to 36683154 39 - TSS region transcription start site region 11271
Cpgi150 1 36691155 to 36692212 1057 CpG island CpG island 150
Cox5b 1 36691487 to 36693388 1901 + protein coding gene cytochrome c oxidase subunit 5B
Tssr6272 1 36691530 to 36691554 24 + TSS region transcription start site region 6272
Tssr41 1 36698495 to 36698496 1 + TSS region transcription start site region 41
Actr1b 1 36699200 to 36710017 10817 - protein coding gene ARP1 actin-related protein 1B, centractin beta
Tssr11272 1 36699774 to 36699778 4 - TSS region transcription start site region 11272
Tssr11273 1 36699909 to 36699933 24 - TSS region transcription start site region 11273
Tssr11274 1 36702158 to 36702185 27 - TSS region transcription start site region 11274
Tssr6273 1 36702408 to 36702409 1 + TSS region transcription start site region 6273
Cpgi151 1 36709514 to 36710223 709 CpG island CpG island 151
Tssr11275 1 36709904 to 36709978 74 - TSS region transcription start site region 11275
Tssr6274 1 36714524 to 36714576 52 + TSS region transcription start site region 6274
4933424G06Rik 1 36714538 to 36757960 43422 + lncRNA gene RIKEN cDNA 4933424G06 gene
Gm33533 1 36739048 to 36744792 5744 - lincRNA gene predicted gene, 33533
D1Mit171 1 36743822 to 36743968 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 171
Cpgi152 1 36746597 to 36746785 188 CpG island CpG island 152
Cpgi153 1 36759052 to 36759355 303 CpG island CpG island 153
Tssr6275 1 36761338 to 36761363 25 + TSS region transcription start site region 6275
Tssr6276 1 36761755 to 36761773 18 + TSS region transcription start site region 6276
Tssr6277 1 36761774 to 36761777 3 + TSS region transcription start site region 6277
Tssr6278 1 36761793 to 36761843 50 + TSS region transcription start site region 6278
Zap70 1 36761798 to 36782818 21020 + protein coding gene zeta-chain (TCR) associated protein kinase
Tssr6279 1 36761847 to 36761897 50 + TSS region transcription start site region 6279
Tssr6280 1 36764512 to 36764523 11 + TSS region transcription start site region 6280
Gm18828 1 36765018 to 36765883 865 - pseudogene predicted gene, 18828
Tssr6281 1 36767070 to 36767095 25 + TSS region transcription start site region 6281
Tssr6282 1 36767414 to 36767425 11 + TSS region transcription start site region 6282
Tssr6283 1 36767459 to 36767469 10 + TSS region transcription start site region 6283
Tssr6284 1 36770421 to 36770425 4 + TSS region transcription start site region 6284
Cpgi154 1 36770718 to 36771414 696 CpG island CpG island 154
Tssr6285 1 36771317 to 36771367 50 + TSS region transcription start site region 6285
Cpgi155 1 36779091 to 36779300 209 CpG island CpG island 155
Tssr6286 1 36779946 to 36779952 6 + TSS region transcription start site region 6286
Tssr42 1 36780020 to 36780031 11 + TSS region transcription start site region 42
Tssr6287 1 36780113 to 36780124 11 + TSS region transcription start site region 6287
Tssr6288 1 36781095 to 36781112 17 + TSS region transcription start site region 6288
Cpgi156 1 36785029 to 36785719 690 CpG island CpG island 156
Tmem131 1 36792189 to 36939874 147685 - protein coding gene transmembrane protein 131
Tssr11276 1 36799403 to 36799406 3 - TSS region transcription start site region 11276
Tssr11277 1 36800110 to 36800116 6 - TSS region transcription start site region 11277