Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36272291-36522110

56 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Neurl3	1	36264602 to 36274674	10072	-	protein coding gene	neuralized E3 ubiquitin protein ligase 3
Tssr6251	1	36272790 to 36272792	2	+	TSS region	transcription start site region 6251
Tssr11248	1	36273427 to 36273443	16	-	TSS region	transcription start site region 11248
Tssr11249	1	36274444 to 36274467	23	-	TSS region	transcription start site region 11249
Tssr11250	1	36274470 to 36274496	26	-	TSS region	transcription start site region 11250
Tssr6252	1	36274572 to 36274617	45	+	TSS region	transcription start site region 6252
Tssr11251	1	36296664 to 36296672	8	-	TSS region	transcription start site region 11251
V125Dq2	1	36300000 to 36300000	0		QTL	vitamin D active form serum level QTL 2
Cpgi138	1	36303316 to 36303602	286		CpG island	CpG island 138
Cpgi139	1	36307571 to 36308569	998		CpG island	CpG island 139
Tssr6253	1	36307727 to 36307735	8	+	TSS region	transcription start site region 6253
Arid5a	1	36307733 to 36324029	16296	+	protein coding gene	AT rich interactive domain 5A (MRF1-like)
Tssr6254	1	36307745 to 36307763	18	+	TSS region	transcription start site region 6254
Tssr6255	1	36307774 to 36307779	5	+	TSS region	transcription start site region 6255
Tssr6256	1	36308059 to 36308075	16	+	TSS region	transcription start site region 6256
Tssr6257	1	36308137 to 36308149	12	+	TSS region	transcription start site region 6257
Tssr6258	1	36308267 to 36308281	14	+	TSS region	transcription start site region 6258
Tssr11252	1	36309619 to 36309623	4	-	TSS region	transcription start site region 11252
Tssr37	1	36325805 to 36325815	10	-	TSS region	transcription start site region 37
Tssr6259	1	36332692 to 36332699	7	+	TSS region	transcription start site region 6259
Tssr6260	1	36332702 to 36332709	7	+	TSS region	transcription start site region 6260
4930403P22Rik	1	36332708 to 36333420	712	+	lincRNA gene	RIKEN cDNA 4930403P22 gene
Tssr11253	1	36333593 to 36333598	5	-	TSS region	transcription start site region 11253
Kansl3	1	36335730 to 36369181	33451	-	protein coding gene	KAT8 regulatory NSL complex subunit 3
Tssr38	1	36340874 to 36340876	2	-	TSS region	transcription start site region 38
Tssr39	1	36345105 to 36345120	15	-	TSS region	transcription start site region 39
Mir6898	1	36348682 to 36348758	76	-	miRNA gene	microRNA 6898
Cpgi140	1	36368514 to 36369602	1088		CpG island	CpG island 140
Tssr11254	1	36369094 to 36369107	13	-	TSS region	transcription start site region 11254
Tssr11255	1	36369121 to 36369159	38	-	TSS region	transcription start site region 11255
Tssr11256	1	36369173 to 36369186	13	-	TSS region	transcription start site region 11256
Tssr6261	1	36372187 to 36372192	5	+	TSS region	transcription start site region 6261
Tssr6262	1	36372198 to 36372208	10	+	TSS region	transcription start site region 6262
Tssr6263	1	36372210 to 36372220	10	+	TSS region	transcription start site region 6263
Tssr6264	1	36372231 to 36372241	10	+	TSS region	transcription start site region 6264
Fer1l5	1	36372291 to 36422110	49819	+	protein coding gene	fer-1-like 5 (C. elegans)
Tssr6265	1	36384491 to 36384494	3	+	TSS region	transcription start site region 6265
Cpgi141	1	36408484 to 36408924	440		CpG island	CpG island 141
Lman2l	1	36422063 to 36445272	23209	-	protein coding gene	lectin, mannose-binding 2-like
Cpgi142	1	36444716 to 36445452	736		CpG island	CpG island 142
Tssr11257	1	36445231 to 36445242	11	-	TSS region	transcription start site region 11257
Tssr11258	1	36445248 to 36445264	16	-	TSS region	transcription start site region 11258
Gm33401	1	36461978 to 36462873	895	+	lncRNA gene	predicted gene, 33401
Tssr6266	1	36461996 to 36462007	11	+	TSS region	transcription start site region 6266
Gm33454	1	36464718 to 36471546	6828	-	lncRNA gene	predicted gene, 33454
Cpgi143	1	36471073 to 36472494	1421		CpG island	CpG island 143
Tssr6267	1	36471590 to 36471606	16	+	TSS region	transcription start site region 6267
Cnnm4	1	36471620 to 36508764	37144	+	protein coding gene	cyclin M4
Gm37909	1	36473952 to 36476110	2158	+	unclassified gene	predicted gene, 37909
Tssr6268	1	36490151 to 36490154	3	+	TSS region	transcription start site region 6268
Tssr6269	1	36492709 to 36492736	27	+	TSS region	transcription start site region 6269
Gm47280	1	36506562 to 36506702	140	+	miRNA gene	predicted gene, 47280
Tssr6270	1	36506858 to 36506862	4	+	TSS region	transcription start site region 6270
Cpgi144	1	36511399 to 36513213	1814		CpG island	CpG island 144
Cnnm3	1	36511867 to 36528237	16370	+	protein coding gene	cyclin M3
Tssr6271	1	36511868 to 36511903	35	+	TSS region	transcription start site region 6271