Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:36245730-36459181

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39625 1 36244383 to 36250542 6159 + lncRNA gene predicted gene, 39625
Cpgi136 1 36254865 to 36255049 184 CpG island CpG island 136
Tssr6249 1 36262417 to 36262427 10 + TSS region transcription start site region 6249
Neurl3 1 36264602 to 36274674 10072 - protein coding gene neuralized E3 ubiquitin protein ligase 3
Tssr6250 1 36265422 to 36265436 14 + TSS region transcription start site region 6250
Tssr11246 1 36267988 to 36268009 21 - TSS region transcription start site region 11246
Cpgi137 1 36268711 to 36269876 1165 CpG island CpG island 137
Tssr11247 1 36269538 to 36269550 12 - TSS region transcription start site region 11247
Tssr6251 1 36272790 to 36272792 2 + TSS region transcription start site region 6251
Tssr11248 1 36273427 to 36273443 16 - TSS region transcription start site region 11248
Tssr11249 1 36274444 to 36274467 23 - TSS region transcription start site region 11249
Tssr11250 1 36274470 to 36274496 26 - TSS region transcription start site region 11250
Tssr6252 1 36274572 to 36274617 45 + TSS region transcription start site region 6252
Tssr11251 1 36296664 to 36296672 8 - TSS region transcription start site region 11251
V125Dq2 1 36300000 to 36300000 0 QTL vitamin D active form serum level QTL 2
Cpgi138 1 36303316 to 36303602 286 CpG island CpG island 138
Cpgi139 1 36307571 to 36308569 998 CpG island CpG island 139
Tssr6253 1 36307727 to 36307735 8 + TSS region transcription start site region 6253
Arid5a 1 36307733 to 36324029 16296 + protein coding gene AT rich interactive domain 5A (MRF1-like)
Tssr6254 1 36307745 to 36307763 18 + TSS region transcription start site region 6254
Tssr6255 1 36307774 to 36307779 5 + TSS region transcription start site region 6255
Tssr6256 1 36308059 to 36308075 16 + TSS region transcription start site region 6256
Tssr6257 1 36308137 to 36308149 12 + TSS region transcription start site region 6257
Tssr6258 1 36308267 to 36308281 14 + TSS region transcription start site region 6258
Tssr11252 1 36309619 to 36309623 4 - TSS region transcription start site region 11252
Tssr37 1 36325805 to 36325815 10 - TSS region transcription start site region 37
Tssr6259 1 36332692 to 36332699 7 + TSS region transcription start site region 6259
Tssr6260 1 36332702 to 36332709 7 + TSS region transcription start site region 6260
4930403P22Rik 1 36332708 to 36333420 712 + lincRNA gene RIKEN cDNA 4930403P22 gene
Tssr11253 1 36333593 to 36333598 5 - TSS region transcription start site region 11253
Kansl3 1 36335730 to 36369181 33451 - protein coding gene KAT8 regulatory NSL complex subunit 3
Tssr38 1 36340874 to 36340876 2 - TSS region transcription start site region 38
Tssr39 1 36345105 to 36345120 15 - TSS region transcription start site region 39
Mir6898 1 36348682 to 36348758 76 - miRNA gene microRNA 6898
Cpgi140 1 36368514 to 36369602 1088 CpG island CpG island 140
Tssr11254 1 36369094 to 36369107 13 - TSS region transcription start site region 11254
Tssr11255 1 36369121 to 36369159 38 - TSS region transcription start site region 11255
Tssr11256 1 36369173 to 36369186 13 - TSS region transcription start site region 11256
Tssr6261 1 36372187 to 36372192 5 + TSS region transcription start site region 6261
Tssr6262 1 36372198 to 36372208 10 + TSS region transcription start site region 6262
Tssr6263 1 36372210 to 36372220 10 + TSS region transcription start site region 6263
Tssr6264 1 36372231 to 36372241 10 + TSS region transcription start site region 6264
Fer1l5 1 36372291 to 36422110 49819 + protein coding gene fer-1-like 5 (C. elegans)
Tssr6265 1 36384491 to 36384494 3 + TSS region transcription start site region 6265
Cpgi141 1 36408484 to 36408924 440 CpG island CpG island 141
Lman2l 1 36422063 to 36445272 23209 - protein coding gene lectin, mannose-binding 2-like
Cpgi142 1 36444716 to 36445452 736 CpG island CpG island 142
Tssr11257 1 36445231 to 36445242 11 - TSS region transcription start site region 11257
Tssr11258 1 36445248 to 36445264 16 - TSS region transcription start site region 11258