Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:35781270-36271373

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28415 1 35806974 to 35810462 3488 + lincRNA gene predicted gene 28415
1110002O04Rik 1 35879845 to 35881119 1274 + lincRNA gene RIKEN cDNA 1110002O04 gene
D1Mit527 1 35919248 to 35919412 164 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 527
Gm33176 1 35942013 to 35955016 13003 + lncRNA gene predicted gene, 33176
D1Mit465 1 35958456 to 35958593 137 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-465
Gm8022 1 35958935 to 35959816 881 + pseudogene predicted gene 8022
Gm39622 1 35959999 to 35965098 5099 + lncRNA gene predicted gene, 39622
Tssr6242 1 35960014 to 35960052 38 + TSS region transcription start site region 6242
Gm37146 1 35981960 to 35986373 4413 - lincRNA gene predicted gene, 37146
Gm33222 1 36002985 to 36011044 8059 - lincRNA gene predicted gene, 33222
Tssr11237 1 36010998 to 36011005 7 - TSS region transcription start site region 11237
4930535G08Rik 1 36011072 to 36011894 822 + lincRNA gene RIKEN cDNA 4930535G08 gene
Gm39623 1 36016795 to 36021488 4693 + lncRNA gene predicted gene, 39623
Tssr11238 1 36017256 to 36017271 15 - TSS region transcription start site region 11238
D1Mit170.1 1 36026177 to 36026297 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 170.1
Orch5 1 36026270 to 36026373 103 QTL autoimmune orchitis resistance 5
D1Mit170 1 36026270 to 36026373 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 170
Sluc15 1 36026270 to 36026373 103 QTL susceptibility to lung cancer 15
Pgia1 1 36026270 to 36026373 103 QTL proteoglycan induced arthritis 1
Gm38049 1 36029647 to 36031018 1371 - unclassified gene predicted gene, 38049
Cpgi132 1 36030622 to 36030928 306 CpG island CpG island 132
D1Mit278 1 36057241 to 36057457 216 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 278
Gm39624 1 36058718 to 36066243 7525 - lncRNA gene predicted gene, 39624
Tssr11239 1 36063135 to 36063150 15 - TSS region transcription start site region 11239
Tssr6243 1 36063299 to 36063314 15 + TSS region transcription start site region 6243
Cpgi133 1 36067811 to 36069627 1816 CpG island CpG island 133
Tssr6244 1 36068371 to 36068391 20 + TSS region transcription start site region 6244
Hs6st1 1 36068400 to 36106446 38046 + protein coding gene heparan sulfate 6-O-sulfotransferase 1
Tssr6245 1 36068643 to 36068672 29 + TSS region transcription start site region 6245
Tssr11240 1 36098552 to 36098561 9 - TSS region transcription start site region 11240
Cpgi134 1 36103456 to 36104295 839 CpG island CpG island 134
Tssr6246 1 36104859 to 36104873 14 + TSS region transcription start site region 6246
Gm37335 1 36105384 to 36106446 1062 - antisense lncRNA gene predicted gene, 37335
Tssr6247 1 36105702 to 36105732 30 + TSS region transcription start site region 6247
Gm33280 1 36129866 to 36134928 5062 + lincRNA gene predicted gene, 33280
Tssr6248 1 36132012 to 36132025 13 + TSS region transcription start site region 6248
Uggt1 1 36140028 to 36244302 104274 - protein coding gene UDP-glucose glycoprotein glucosyltransferase 1
Mir6897 1 36144252 to 36144313 61 - miRNA gene microRNA 6897
Gm18750 1 36177669 to 36179017 1348 - pseudogene predicted gene, 18750
Tssr11241 1 36241085 to 36241089 4 - TSS region transcription start site region 11241
Cpgi135 1 36243810 to 36244523 713 CpG island CpG island 135
Tssr11242 1 36244122 to 36244131 9 - TSS region transcription start site region 11242
Tssr11243 1 36244132 to 36244176 44 - TSS region transcription start site region 11243
Tssr11244 1 36244245 to 36244320 75 - TSS region transcription start site region 11244
Tssr11245 1 36244324 to 36244335 11 - TSS region transcription start site region 11245
Gm39625 1 36244383 to 36250542 6159 + lncRNA gene predicted gene, 39625
Cpgi136 1 36254865 to 36255049 184 CpG island CpG island 136
Tssr6249 1 36262417 to 36262427 10 + TSS region transcription start site region 6249
Neurl3 1 36264602 to 36274674 10072 - protein coding gene neuralized E3 ubiquitin protein ligase 3
Tssr6250 1 36265422 to 36265436 14 + TSS region transcription start site region 6250
Tssr11246 1 36267988 to 36268009 21 - TSS region transcription start site region 11246
Cpgi137 1 36268711 to 36269876 1165 CpG island CpG island 137
Tssr11247 1 36269538 to 36269550 12 - TSS region transcription start site region 11247