Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Estoq4 | 1 | 39216699 | QTL | embryo survival total QTL 4 | ||
W10q6 | 1 | 39216699 | QTL | weight 10 weeks QTL 6 | ||
Lgq5 | 1 | 39216699 | QTL | late growth QTL 5 | ||
Lvrq3 | 1 | 39216699 | QTL | liver weight QTL 3 | ||
W6q14 | 1 | 39216699 | QTL | weight 6 weeks QTL 14 | ||
D1Mit72 | 1 | 148 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 72 | ||
W3q12 | 1 | 39216699 | QTL | weight 3 weeks QTL 12 | ||
Cpgi124 | 1 | 239 | CpG island | CpG island 124 | ||
Gm46087 | 1 | 8789 | - | lncRNA gene | predicted gene, 46087 | |
Cpgi125 | 1 | 1231 | CpG island | CpG island 125 | ||
Tssr6233 | 1 | 68 | + | TSS region | transcription start site region 6233 | |
Gm37224 | 1 | 147 | + | pseudogene | predicted gene, 37224 | |
Gm37845 | 1 | 354 | + | pseudogene | predicted gene, 37845 | |
Gm32790 | 1 | 32617 | - | lncRNA gene | predicted gene, 32790 | |
Cpgi126 | 1 | 671 | CpG island | CpG island 126 | ||
Tssr6234 | 1 | 68 | + | TSS region | transcription start site region 6234 | |
Arhgef4 | 1 | 11032 | + | protein coding gene | Rho guanine nucleotide exchange factor (GEF) 4 | |
Cpgi127 | 1 | 550 | CpG island | CpG island 127 | ||
Gm38336 | 1 | 2548 | - | antisense lncRNA gene | predicted gene, 38336 | |
Fam168b | 1 | 29832 | - | protein coding gene | family with sequence similarity 168, member B | |
Tssr11226 | 1 | 33 | - | TSS region | transcription start site region 11226 | |
Tssr11227 | 1 | 27 | - | TSS region | transcription start site region 11227 | |
Tssr11228 | 1 | 14 | - | TSS region | transcription start site region 11228 | |
Tssr11229 | 1 | 37 | - | TSS region | transcription start site region 11229 | |
Gm37127 | 1 | 3035 | + | unclassified gene | predicted gene, 37127 | |
Cpgi128 | 1 | 1060 | CpG island | CpG island 128 | ||
Tssr11230 | 1 | 5 | - | TSS region | transcription start site region 11230 | |
Tssr11231 | 1 | 5 | - | TSS region | transcription start site region 11231 | |
Tssr11232 | 1 | 11 | - | TSS region | transcription start site region 11232 | |
Tssr11233 | 1 | 7 | - | TSS region | transcription start site region 11233 | |
Tssr11234 | 1 | 52 | - | TSS region | transcription start site region 11234 | |
Tssr11235 | 1 | 8 | - | TSS region | transcription start site region 11235 | |
Tssr6235 | 1 | 26 | + | TSS region | transcription start site region 6235 | |
Cpgi129 | 1 | 493 | CpG island | CpG island 129 | ||
Tssr6236 | 1 | 10 | + | TSS region | transcription start site region 6236 | |
Tssr6237 | 1 | 60 | + | TSS region | transcription start site region 6237 | |
Plekhb2 | 1 | 29604 | + | protein coding gene | pleckstrin homology domain containing, family B (evectins) member 2 | |
Tssr6238 | 1 | 51 | + | TSS region | transcription start site region 6238 | |
Tssr6239 | 1 | 30 | + | TSS region | transcription start site region 6239 | |
Tssr6240 | 1 | 21 | + | TSS region | transcription start site region 6240 | |
Gm19430 | 1 | 2136 | + | pseudogene | predicted gene, 19430 | |
Cpgi130 | 1 | 1136 | CpG island | CpG island 130 | ||
D1Mit121 | 1 | 256 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 121 | ||
D1Dcr51 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 51 | ||
Gm37670 | 1 | 228 | - | pseudogene | predicted gene, 37670 | |
Gm8009 | 1 | 435 | + | pseudogene | predicted gene 8009 | |
Gm38027 | 1 | 234 | + | pseudogene | predicted gene, 38027 | |
D1Dcr24 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 24 | ||
D1Dcr25 | 1 | 96 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 25 | ||
D1Mit243 | 1 | 144 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 243 | ||
Gm25096 | 1 | 128 | - | snoRNA gene | predicted gene, 25096 | |
Cpgi131 | 1 | 172 | CpG island | CpG island 131 | ||
Tssr6241 | 1 | 1 | + | TSS region | transcription start site region 6241 | |
D1Mit71 | 1 | 120 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 71 | ||
Tssr11236 | 1 | 2 | - | TSS region | transcription start site region 11236 | |
D1Mit1017 | 1 | 180 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 1017 | ||
D1Mit1016 | 1 | 123 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 1016 | ||
Gm37068 | 1 | 25691 | - | lincRNA gene | predicted gene, 37068 | |
Gm25634 | 1 | 104 | + | snRNA gene | predicted gene, 25634 | |
Gm28415 | 1 | 3488 | + | lincRNA gene | predicted gene 28415 | |
1110002O04Rik | 1 | 1274 | + | lincRNA gene | RIKEN cDNA 1110002O04 gene | |
D1Mit527 | 1 | 164 | DNA segment | DNA Segment, Chr 1, Massachusetts Institute of Technology 527 | ||
Gm33176 | 1 | 13003 | + | lncRNA gene | predicted gene, 33176 | |
D1Mit465 | 1 | 137 | DNA segment | DNA Segment, Chr 1, Massachusetts Institute of Technology-465 | ||
Gm8022 | 1 | 881 | + | pseudogene | predicted gene 8022 | |
Gm39622 | 1 | 5099 | + | lncRNA gene | predicted gene, 39622 | |
Tssr6242 | 1 | 38 | + | TSS region | transcription start site region 6242 | |
Gm37146 | 1 | 4413 | - | lincRNA gene | predicted gene, 37146 | |
Gm33222 | 1 | 8059 | - | lincRNA gene | predicted gene, 33222 | |
Tssr11237 | 1 | 7 | - | TSS region | transcription start site region 11237 | |
4930535G08Rik | 1 | 822 | + | lincRNA gene | RIKEN cDNA 4930535G08 gene | |
Gm39623 | 1 | 4693 | + | lncRNA gene | predicted gene, 39623 | |
Tssr11238 | 1 | 15 | - | TSS region | transcription start site region 11238 | |
D1Mit170.1 | 1 | 120 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 170.1 | ||
D1Mit170 | 1 | 103 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 170 | ||
Orch5 | 1 | 103 | QTL | autoimmune orchitis resistance 5 | ||
Sluc15 | 1 | 103 | QTL | susceptibility to lung cancer 15 | ||
Pgia1 | 1 | 103 | QTL | proteoglycan induced arthritis 1 | ||
Gm38049 | 1 | 1371 | - | unclassified gene | predicted gene, 38049 | |
Cpgi132 | 1 | 306 | CpG island | CpG island 132 | ||
D1Mit278 | 1 | 216 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 278 | ||
Gm39624 | 1 | 7525 | - | lncRNA gene | predicted gene, 39624 | |
Tssr11239 | 1 | 15 | - | TSS region | transcription start site region 11239 | |
Tssr6243 | 1 | 15 | + | TSS region | transcription start site region 6243 | |
Cpgi133 | 1 | 1816 | CpG island | CpG island 133 | ||
Tssr6244 | 1 | 20 | + | TSS region | transcription start site region 6244 | |
Hs6st1 | 1 | 38046 | + | protein coding gene | heparan sulfate 6-O-sulfotransferase 1 | |
Tssr6245 | 1 | 29 | + | TSS region | transcription start site region 6245 | |
Tssr11240 | 1 | 9 | - | TSS region | transcription start site region 11240 | |
Cpgi134 | 1 | 839 | CpG island | CpG island 134 | ||
Tssr6246 | 1 | 14 | + | TSS region | transcription start site region 6246 | |
Gm37335 | 1 | 1062 | - | antisense lncRNA gene | predicted gene, 37335 | |
Tssr6247 | 1 | 30 | + | TSS region | transcription start site region 6247 | |
Gm33280 | 1 | 5062 | + | lincRNA gene | predicted gene, 33280 | |
Tssr6248 | 1 | 13 | + | TSS region | transcription start site region 6248 | |
Uggt1 | 1 | 104274 | - | protein coding gene | UDP-glucose glycoprotein glucosyltransferase 1 | |
Mir6897 | 1 | 61 | - | miRNA gene | microRNA 6897 | |
Gm18750 | 1 | 1348 | - | pseudogene | predicted gene, 18750 | |
Tssr11241 | 1 | 4 | - | TSS region | transcription start site region 11241 | |
Cpgi135 | 1 | 713 | CpG island | CpG island 135 | ||
Tssr11242 | 1 | 9 | - | TSS region | transcription start site region 11242 | |
Tssr11243 | 1 | 44 | - | TSS region | transcription start site region 11243 | |
Tssr11244 | 1 | 75 | - | TSS region | transcription start site region 11244 | |
Tssr11245 | 1 | 11 | - | TSS region | transcription start site region 11245 | |
Gm39625 | 1 | 6159 | + | lncRNA gene | predicted gene, 39625 | |
Cpgi136 | 1 | 184 | CpG island | CpG island 136 | ||
Tssr6249 | 1 | 10 | + | TSS region | transcription start site region 6249 | |
Neurl3 | 1 | 10072 | - | protein coding gene | neuralized E3 ubiquitin protein ligase 3 | |
Tssr6250 | 1 | 14 | + | TSS region | transcription start site region 6250 | |
Tssr11246 | 1 | 21 | - | TSS region | transcription start site region 11246 | |
Cpgi137 | 1 | 1165 | CpG island | CpG island 137 | ||
Tssr11247 | 1 | 12 | - | TSS region | transcription start site region 11247 | |
Tssr6251 | 1 | 2 | + | TSS region | transcription start site region 6251 | |
Tssr11248 | 1 | 16 | - | TSS region | transcription start site region 11248 | |
Tssr11249 | 1 | 23 | - | TSS region | transcription start site region 11249 | |
Tssr11250 | 1 | 26 | - | TSS region | transcription start site region 11250 | |
Tssr6252 | 1 | 45 | + | TSS region | transcription start site region 6252 | |
Tssr11251 | 1 | 8 | - | TSS region | transcription start site region 11251 | |
V125Dq2 | 1 | 0 | QTL | vitamin D active form serum level QTL 2 | ||
Cpgi138 | 1 | 286 | CpG island | CpG island 138 | ||
Cpgi139 | 1 | 998 | CpG island | CpG island 139 | ||
Tssr6253 | 1 | 8 | + | TSS region | transcription start site region 6253 | |
Arid5a | 1 | 16296 | + | protein coding gene | AT rich interactive domain 5A (MRF1-like) | |
Tssr6254 | 1 | 18 | + | TSS region | transcription start site region 6254 | |
Tssr6255 | 1 | 5 | + | TSS region | transcription start site region 6255 | |
Tssr6256 | 1 | 16 | + | TSS region | transcription start site region 6256 | |
Tssr6257 | 1 | 12 | + | TSS region | transcription start site region 6257 | |
Tssr6258 | 1 | 14 | + | TSS region | transcription start site region 6258 | |
Tssr11252 | 1 | 4 | - | TSS region | transcription start site region 11252 | |
Tssr37 | 1 | 10 | - | TSS region | transcription start site region 37 | |
Tssr6259 | 1 | 7 | + | TSS region | transcription start site region 6259 | |
Tssr6260 | 1 | 7 | + | TSS region | transcription start site region 6260 | |
4930403P22Rik | 1 | 712 | + | lincRNA gene | RIKEN cDNA 4930403P22 gene | |
Tssr11253 | 1 | 5 | - | TSS region | transcription start site region 11253 | |
Kansl3 | 1 | 33451 | - | protein coding gene | KAT8 regulatory NSL complex subunit 3 | |
Tssr38 | 1 | 2 | - | TSS region | transcription start site region 38 | |
Tssr39 | 1 | 15 | - | TSS region | transcription start site region 39 | |
Mir6898 | 1 | 76 | - | miRNA gene | microRNA 6898 | |
Cpgi140 | 1 | 1088 | CpG island | CpG island 140 | ||
Tssr11254 | 1 | 13 | - | TSS region | transcription start site region 11254 | |
Tssr11255 | 1 | 38 | - | TSS region | transcription start site region 11255 | |
Tssr11256 | 1 | 13 | - | TSS region | transcription start site region 11256 | |
Tssr6261 | 1 | 5 | + | TSS region | transcription start site region 6261 | |
Tssr6262 | 1 | 10 | + | TSS region | transcription start site region 6262 | |
Tssr6263 | 1 | 10 | + | TSS region | transcription start site region 6263 | |
Tssr6264 | 1 | 10 | + | TSS region | transcription start site region 6264 | |
Fer1l5 | 1 | 49819 | + | protein coding gene | fer-1-like 5 (C. elegans) | |
Tssr6265 | 1 | 3 | + | TSS region | transcription start site region 6265 | |
Cpgi141 | 1 | 440 | CpG island | CpG island 141 | ||
Lman2l | 1 | 23209 | - | protein coding gene | lectin, mannose-binding 2-like | |
Cpgi142 | 1 | 736 | CpG island | CpG island 142 | ||
Tssr11257 | 1 | 11 | - | TSS region | transcription start site region 11257 | |
Tssr11258 | 1 | 16 | - | TSS region | transcription start site region 11258 | |
Gm33401 | 1 | 895 | + | lncRNA gene | predicted gene, 33401 | |
Tssr6266 | 1 | 11 | + | TSS region | transcription start site region 6266 | |
Gm33454 | 1 | 6828 | - | lncRNA gene | predicted gene, 33454 | |
Cpgi143 | 1 | 1421 | CpG island | CpG island 143 | ||
Tssr6267 | 1 | 16 | + | TSS region | transcription start site region 6267 | |
Cnnm4 | 1 | 37144 | + | protein coding gene | cyclin M4 | |
Gm37909 | 1 | 2158 | + | unclassified gene | predicted gene, 37909 | |
Tssr6268 | 1 | 3 | + | TSS region | transcription start site region 6268 | |
Tssr6269 | 1 | 27 | + | TSS region | transcription start site region 6269 | |
Gm47280 | 1 | 140 | + | miRNA gene | predicted gene, 47280 | |
Tssr6270 | 1 | 4 | + | TSS region | transcription start site region 6270 | |
Cpgi144 | 1 | 1814 | CpG island | CpG island 144 | ||
Cnnm3 | 1 | 16370 | + | protein coding gene | cyclin M3 | |
Tssr6271 | 1 | 35 | + | TSS region | transcription start site region 6271 | |
Gm38033 | 1 | 703 | - | antisense lncRNA gene | predicted gene, 38033 | |
Ankrd23 | 1 | 6363 | - | protein coding gene | ankyrin repeat domain 23 | |
Gm42417 | 1 | 9236 | - | protein coding gene | predicted gene, 42417 | |
Tssr11259 | 1 | 7 | - | TSS region | transcription start site region 11259 | |
Tssr11260 | 1 | 45 | - | TSS region | transcription start site region 11260 | |
Ankrd39 | 1 | 9269 | - | protein coding gene | ankyrin repeat domain 39 | |
Cpgi145 | 1 | 334 | CpG island | CpG island 145 | ||
Cpgi146 | 1 | 875 | CpG island | CpG island 146 | ||
Tssr11261 | 1 | 39 | - | TSS region | transcription start site region 11261 | |
Sema4c | 1 | 9710 | - | protein coding gene | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C | |
Cpgi147 | 1 | 361 | CpG island | CpG island 147 | ||
Cpgi148 | 1 | 2327 | CpG island | CpG island 148 | ||
Tssr11262 | 1 | 30 | - | TSS region | transcription start site region 11262 | |
Tssr11263 | 1 | 44 | - | TSS region | transcription start site region 11263 | |
Tssr40 | 1 | 36 | + | TSS region | transcription start site region 40 | |
D430040D24Rik | 1 | 7912 | + | unclassified non-coding RNA gene | RIKEN cDNA D430040D24 gene | |
Tssr11264 | 1 | 30 | - | TSS region | transcription start site region 11264 | |
Tssr11265 | 1 | 52 | - | TSS region | transcription start site region 11265 | |
Tssr11266 | 1 | 16 | - | TSS region | transcription start site region 11266 | |
Fam178b | 1 | 120491 | - | protein coding gene | family with sequence similarity 178, member B | |
Tssr11267 | 1 | 2 | - | TSS region | transcription start site region 11267 | |
Tssr11268 | 1 | 23 | - | TSS region | transcription start site region 11268 | |
Gm6428 | 1 | 344 | + | pseudogene | predicted pseudogene 6428 | |
Tssr11269 | 1 | 31 | - | TSS region | transcription start site region 11269 | |
Gm24133 | 1 | 74 | + | miRNA gene | predicted gene, 24133 | |
Cpgi149 | 1 | 678 | CpG island | CpG island 149 | ||
Tssr11270 | 1 | 11 | - | TSS region | transcription start site region 11270 | |
Tssr11271 | 1 | 39 | - | TSS region | transcription start site region 11271 | |
Cpgi150 | 1 | 1057 | CpG island | CpG island 150 | ||
Cox5b | 1 | 1901 | + | protein coding gene | cytochrome c oxidase subunit 5B | |
Tssr6272 | 1 | 24 | + | TSS region | transcription start site region 6272 | |
Tssr41 | 1 | 1 | + | TSS region | transcription start site region 41 | |
Actr1b | 1 | 10817 | - | protein coding gene | ARP1 actin-related protein 1B, centractin beta |