Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:34575874-38105876

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451 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi122 1 34579133 to 34580216 1083 CpG island CpG island 122
1700101I19Rik 1 34579202 to 34579711 509 - antisense lncRNA gene RIKEN cDNA 1700101I19 gene
Tssr6228 1 34579512 to 34579523 11 + TSS region transcription start site region 6228
Amer3 1 34579657 to 34590944 11287 + protein coding gene APC membrane recruitment 3
Tssr6229 1 34579695 to 34579751 56 + TSS region transcription start site region 6229
Gm28418 1 34607297 to 34607719 422 - pseudogene predicted gene 28418
Gm36984 1 34610572 to 34610806 234 - pseudogene predicted gene, 36984
Gm29730 1 34610908 to 34612303 1395 - pseudogene predicted gene, 29730
AA619741 1 34635544 to 34636189 645 - pseudogene expressed sequence AA619741
Gm38647 1 34657236 to 34667004 9768 - lncRNA gene predicted gene, 38647
Cpgi123 1 34677806 to 34678793 987 CpG island CpG island 123
Tssr6230 1 34678149 to 34678175 26 + TSS region transcription start site region 6230
Tssr6231 1 34678176 to 34678213 37 + TSS region transcription start site region 6231
Gm32920 1 34685665 to 34688842 3177 - lncRNA gene predicted gene, 32920
Tssr6232 1 34697545 to 34697551 6 + TSS region transcription start site region 6232
Lgq5 1 34721057 to 73937756 39216699 QTL late growth QTL 5
W6q14 1 34721057 to 73937756 39216699 QTL weight 6 weeks QTL 14
Lvrq3 1 34721057 to 73937756 39216699 QTL liver weight QTL 3
D1Mit72 1 34721057 to 34721205 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 72
W10q6 1 34721057 to 73937756 39216699 QTL weight 10 weeks QTL 6
Estoq4 1 34721057 to 73937756 39216699 QTL embryo survival total QTL 4
W3q12 1 34721057 to 73937756 39216699 QTL weight 3 weeks QTL 12
Cpgi124 1 34723746 to 34723985 239 CpG island CpG island 124
Gm46087 1 34748272 to 34757061 8789 - lncRNA gene predicted gene, 46087
Cpgi125 1 34750164 to 34751395 1231 CpG island CpG island 125
Tssr6233 1 34750584 to 34750652 68 + TSS region transcription start site region 6233
Gm37224 1 34752775 to 34752922 147 + pseudogene predicted gene, 37224
Gm37845 1 34753123 to 34753477 354 + pseudogene predicted gene, 37845
Gm32790 1 34759936 to 34792553 32617 - lncRNA gene predicted gene, 32790
Cpgi126 1 34801633 to 34802304 671 CpG island CpG island 126
Tssr6234 1 34801708 to 34801776 68 + TSS region transcription start site region 6234
Arhgef4 1 34801722 to 34812754 11032 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 4
Cpgi127 1 34805957 to 34806507 550 CpG island CpG island 127
Gm38336 1 34809360 to 34811908 2548 - antisense lncRNA gene predicted gene, 38336
Fam168b 1 34813218 to 34843050 29832 - protein coding gene family with sequence similarity 168, member B
Tssr11226 1 34816896 to 34816929 33 - TSS region transcription start site region 11226
Tssr11227 1 34818072 to 34818099 27 - TSS region transcription start site region 11227
Tssr11228 1 34819755 to 34819769 14 - TSS region transcription start site region 11228
Tssr11229 1 34819927 to 34819964 37 - TSS region transcription start site region 11229
Gm37127 1 34823525 to 34826560 3035 + unclassified gene predicted gene, 37127
Cpgi128 1 34842429 to 34843489 1060 CpG island CpG island 128
Tssr11230 1 34842896 to 34842901 5 - TSS region transcription start site region 11230
Tssr11231 1 34842939 to 34842944 5 - TSS region transcription start site region 11231
Tssr11232 1 34842965 to 34842976 11 - TSS region transcription start site region 11232
Tssr11233 1 34842977 to 34842984 7 - TSS region transcription start site region 11233
Tssr11234 1 34842987 to 34843039 52 - TSS region transcription start site region 11234
Tssr11235 1 34843057 to 34843065 8 - TSS region transcription start site region 11235
Tssr6235 1 34849694 to 34849720 26 + TSS region transcription start site region 6235
Cpgi129 1 34849768 to 34850261 493 CpG island CpG island 129
Tssr6236 1 34849937 to 34849947 10 + TSS region transcription start site region 6236
Tssr6237 1 34849950 to 34850010 60 + TSS region transcription start site region 6237
Plekhb2 1 34849976 to 34879580 29604 + protein coding gene pleckstrin homology domain containing, family B (evectins) member 2
Tssr6238 1 34850312 to 34850363 51 + TSS region transcription start site region 6238
Tssr6239 1 34851832 to 34851862 30 + TSS region transcription start site region 6239
Tssr6240 1 34866179 to 34866200 21 + TSS region transcription start site region 6240
Gm19430 1 34928509 to 34930645 2136 + pseudogene predicted gene, 19430
Cpgi130 1 34929538 to 34930674 1136 CpG island CpG island 130
D1Mit121 1 34942404 to 34942660 256 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 121
D1Dcr51 1 34955162 to 34955257 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 51
Gm37670 1 34969627 to 34969855 228 - pseudogene predicted gene, 37670
Gm8009 1 34970065 to 34970500 435 + pseudogene predicted gene 8009
Gm38027 1 34985656 to 34985890 234 + pseudogene predicted gene, 38027
D1Dcr24 1 35001970 to 35002065 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 24
D1Dcr25 1 35053365 to 35053461 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 25
D1Mit243 1 35074701 to 35074845 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 243
Gm25096 1 35178956 to 35179084 128 - snoRNA gene predicted gene, 25096
Cpgi131 1 35216232 to 35216404 172 CpG island CpG island 131
Tssr6241 1 35282623 to 35282624 1 + TSS region transcription start site region 6241
D1Mit71 1 35352511 to 35352631 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 71
Tssr11236 1 35439374 to 35439376 2 - TSS region transcription start site region 11236
D1Mit1017 1 35588161 to 35588341 180 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1017
D1Mit1016 1 35588363 to 35588486 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1016
Gm37068 1 35625606 to 35651297 25691 - lincRNA gene predicted gene, 37068
Gm25634 1 35761602 to 35761706 104 + snRNA gene predicted gene, 25634
Gm28415 1 35806974 to 35810462 3488 + lincRNA gene predicted gene 28415
1110002O04Rik 1 35879845 to 35881119 1274 + lincRNA gene RIKEN cDNA 1110002O04 gene
D1Mit527 1 35919248 to 35919412 164 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 527
Gm33176 1 35942013 to 35955016 13003 + lncRNA gene predicted gene, 33176
D1Mit465 1 35958456 to 35958593 137 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-465
Gm8022 1 35958935 to 35959816 881 + pseudogene predicted gene 8022
Gm39622 1 35959999 to 35965098 5099 + lncRNA gene predicted gene, 39622
Tssr6242 1 35960014 to 35960052 38 + TSS region transcription start site region 6242
Gm37146 1 35981960 to 35986373 4413 - lincRNA gene predicted gene, 37146
Gm33222 1 36002985 to 36011044 8059 - lincRNA gene predicted gene, 33222
Tssr11237 1 36010998 to 36011005 7 - TSS region transcription start site region 11237
4930535G08Rik 1 36011072 to 36011894 822 + lincRNA gene RIKEN cDNA 4930535G08 gene
Gm39623 1 36016795 to 36021488 4693 + lncRNA gene predicted gene, 39623
Tssr11238 1 36017256 to 36017271 15 - TSS region transcription start site region 11238
D1Mit170.1 1 36026177 to 36026297 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 170.1
D1Mit170 1 36026270 to 36026373 103 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 170
Sluc15 1 36026270 to 36026373 103 QTL susceptibility to lung cancer 15
Pgia1 1 36026270 to 36026373 103 QTL proteoglycan induced arthritis 1
Orch5 1 36026270 to 36026373 103 QTL autoimmune orchitis resistance 5
Gm38049 1 36029647 to 36031018 1371 - unclassified gene predicted gene, 38049
Cpgi132 1 36030622 to 36030928 306 CpG island CpG island 132
D1Mit278 1 36057241 to 36057457 216 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 278
Gm39624 1 36058718 to 36066243 7525 - lncRNA gene predicted gene, 39624
Tssr11239 1 36063135 to 36063150 15 - TSS region transcription start site region 11239
Tssr6243 1 36063299 to 36063314 15 + TSS region transcription start site region 6243
Cpgi133 1 36067811 to 36069627 1816 CpG island CpG island 133
Tssr6244 1 36068371 to 36068391 20 + TSS region transcription start site region 6244
Hs6st1 1 36068400 to 36106446 38046 + protein coding gene heparan sulfate 6-O-sulfotransferase 1
Tssr6245 1 36068643 to 36068672 29 + TSS region transcription start site region 6245
Tssr11240 1 36098552 to 36098561 9 - TSS region transcription start site region 11240
Cpgi134 1 36103456 to 36104295 839 CpG island CpG island 134
Tssr6246 1 36104859 to 36104873 14 + TSS region transcription start site region 6246
Gm37335 1 36105384 to 36106446 1062 - antisense lncRNA gene predicted gene, 37335
Tssr6247 1 36105702 to 36105732 30 + TSS region transcription start site region 6247
Gm33280 1 36129866 to 36134928 5062 + lincRNA gene predicted gene, 33280
Tssr6248 1 36132012 to 36132025 13 + TSS region transcription start site region 6248
Uggt1 1 36140028 to 36244302 104274 - protein coding gene UDP-glucose glycoprotein glucosyltransferase 1
Mir6897 1 36144252 to 36144313 61 - miRNA gene microRNA 6897
Gm18750 1 36177669 to 36179017 1348 - pseudogene predicted gene, 18750
Tssr11241 1 36241085 to 36241089 4 - TSS region transcription start site region 11241
Cpgi135 1 36243810 to 36244523 713 CpG island CpG island 135
Tssr11242 1 36244122 to 36244131 9 - TSS region transcription start site region 11242
Tssr11243 1 36244132 to 36244176 44 - TSS region transcription start site region 11243
Tssr11244 1 36244245 to 36244320 75 - TSS region transcription start site region 11244
Tssr11245 1 36244324 to 36244335 11 - TSS region transcription start site region 11245
Gm39625 1 36244383 to 36250542 6159 + lncRNA gene predicted gene, 39625
Cpgi136 1 36254865 to 36255049 184 CpG island CpG island 136
Tssr6249 1 36262417 to 36262427 10 + TSS region transcription start site region 6249
Neurl3 1 36264602 to 36274674 10072 - protein coding gene neuralized E3 ubiquitin protein ligase 3
Tssr6250 1 36265422 to 36265436 14 + TSS region transcription start site region 6250
Tssr11246 1 36267988 to 36268009 21 - TSS region transcription start site region 11246
Cpgi137 1 36268711 to 36269876 1165 CpG island CpG island 137
Tssr11247 1 36269538 to 36269550 12 - TSS region transcription start site region 11247
Tssr6251 1 36272790 to 36272792 2 + TSS region transcription start site region 6251
Tssr11248 1 36273427 to 36273443 16 - TSS region transcription start site region 11248
Tssr11249 1 36274444 to 36274467 23 - TSS region transcription start site region 11249
Tssr11250 1 36274470 to 36274496 26 - TSS region transcription start site region 11250
Tssr6252 1 36274572 to 36274617 45 + TSS region transcription start site region 6252
Tssr11251 1 36296664 to 36296672 8 - TSS region transcription start site region 11251
V125Dq2 1 36300000 to 36300000 0 QTL vitamin D active form serum level QTL 2
Cpgi138 1 36303316 to 36303602 286 CpG island CpG island 138
Cpgi139 1 36307571 to 36308569 998 CpG island CpG island 139
Tssr6253 1 36307727 to 36307735 8 + TSS region transcription start site region 6253
Arid5a 1 36307733 to 36324029 16296 + protein coding gene AT rich interactive domain 5A (MRF1-like)
Tssr6254 1 36307745 to 36307763 18 + TSS region transcription start site region 6254
Tssr6255 1 36307774 to 36307779 5 + TSS region transcription start site region 6255
Tssr6256 1 36308059 to 36308075 16 + TSS region transcription start site region 6256
Tssr6257 1 36308137 to 36308149 12 + TSS region transcription start site region 6257
Tssr6258 1 36308267 to 36308281 14 + TSS region transcription start site region 6258
Tssr11252 1 36309619 to 36309623 4 - TSS region transcription start site region 11252
Tssr37 1 36325805 to 36325815 10 - TSS region transcription start site region 37
Tssr6259 1 36332692 to 36332699 7 + TSS region transcription start site region 6259
Tssr6260 1 36332702 to 36332709 7 + TSS region transcription start site region 6260
4930403P22Rik 1 36332708 to 36333420 712 + lincRNA gene RIKEN cDNA 4930403P22 gene
Tssr11253 1 36333593 to 36333598 5 - TSS region transcription start site region 11253
Kansl3 1 36335730 to 36369181 33451 - protein coding gene KAT8 regulatory NSL complex subunit 3
Tssr38 1 36340874 to 36340876 2 - TSS region transcription start site region 38
Tssr39 1 36345105 to 36345120 15 - TSS region transcription start site region 39
Mir6898 1 36348682 to 36348758 76 - miRNA gene microRNA 6898
Cpgi140 1 36368514 to 36369602 1088 CpG island CpG island 140
Tssr11254 1 36369094 to 36369107 13 - TSS region transcription start site region 11254
Tssr11255 1 36369121 to 36369159 38 - TSS region transcription start site region 11255
Tssr11256 1 36369173 to 36369186 13 - TSS region transcription start site region 11256
Tssr6261 1 36372187 to 36372192 5 + TSS region transcription start site region 6261
Tssr6262 1 36372198 to 36372208 10 + TSS region transcription start site region 6262
Tssr6263 1 36372210 to 36372220 10 + TSS region transcription start site region 6263
Tssr6264 1 36372231 to 36372241 10 + TSS region transcription start site region 6264
Fer1l5 1 36372291 to 36422110 49819 + protein coding gene fer-1-like 5 (C. elegans)
Tssr6265 1 36384491 to 36384494 3 + TSS region transcription start site region 6265
Cpgi141 1 36408484 to 36408924 440 CpG island CpG island 141
Lman2l 1 36422063 to 36445272 23209 - protein coding gene lectin, mannose-binding 2-like
Cpgi142 1 36444716 to 36445452 736 CpG island CpG island 142
Tssr11257 1 36445231 to 36445242 11 - TSS region transcription start site region 11257
Tssr11258 1 36445248 to 36445264 16 - TSS region transcription start site region 11258
Gm33401 1 36461978 to 36462873 895 + lncRNA gene predicted gene, 33401
Tssr6266 1 36461996 to 36462007 11 + TSS region transcription start site region 6266
Gm33454 1 36464718 to 36471546 6828 - lncRNA gene predicted gene, 33454
Cpgi143 1 36471073 to 36472494 1421 CpG island CpG island 143
Tssr6267 1 36471590 to 36471606 16 + TSS region transcription start site region 6267
Cnnm4 1 36471620 to 36508764 37144 + protein coding gene cyclin M4
Gm37909 1 36473952 to 36476110 2158 + unclassified gene predicted gene, 37909
Tssr6268 1 36490151 to 36490154 3 + TSS region transcription start site region 6268
Tssr6269 1 36492709 to 36492736 27 + TSS region transcription start site region 6269
Gm47280 1 36506562 to 36506702 140 + miRNA gene predicted gene, 47280
Tssr6270 1 36506858 to 36506862 4 + TSS region transcription start site region 6270
Cpgi144 1 36511399 to 36513213 1814 CpG island CpG island 144
Cnnm3 1 36511867 to 36528237 16370 + protein coding gene cyclin M3
Tssr6271 1 36511868 to 36511903 35 + TSS region transcription start site region 6271
Gm38033 1 36527534 to 36528237 703 - antisense lncRNA gene predicted gene, 38033
Gm42417 1 36530193 to 36539429 9236 - protein coding gene predicted gene, 42417
Ankrd23 1 36530193 to 36536556 6363 - protein coding gene ankyrin repeat domain 23
Tssr11259 1 36534727 to 36534734 7 - TSS region transcription start site region 11259
Tssr11260 1 36535719 to 36535764 45 - TSS region transcription start site region 11260
Ankrd39 1 36538171 to 36547440 9269 - protein coding gene ankyrin repeat domain 39
Cpgi145 1 36541798 to 36542132 334 CpG island CpG island 145
Cpgi146 1 36546768 to 36547643 875 CpG island CpG island 146
Tssr11261 1 36547194 to 36547233 39 - TSS region transcription start site region 11261
Sema4c 1 36548639 to 36558349 9710 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Cpgi147 1 36552687 to 36553048 361 CpG island CpG island 147
Cpgi148 1 36556599 to 36558926 2327 CpG island CpG island 148
Tssr11262 1 36556661 to 36556691 30 - TSS region transcription start site region 11262
Tssr11263 1 36557517 to 36557561 44 - TSS region transcription start site region 11263
Tssr40 1 36557695 to 36557731 36 + TSS region transcription start site region 40
D430040D24Rik 1 36557701 to 36565613 7912 + unclassified non-coding RNA gene RIKEN cDNA D430040D24 gene
Tssr11264 1 36558182 to 36558212 30 - TSS region transcription start site region 11264
Tssr11265 1 36558214 to 36558266 52 - TSS region transcription start site region 11265