Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:34467806-34888793

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn18 1 34459746 to 34473784 14038 + protein coding gene protein tyrosine phosphatase, non-receptor type 18
Gm28417 1 34468834 to 34473148 4314 - unclassified non-coding RNA gene predicted gene 28417
Cpgi119 1 34472565 to 34473380 815 CpG island CpG island 119
Tssr6220 1 34472714 to 34472757 43 + TSS region transcription start site region 6220
Tssr6221 1 34472765 to 34472772 7 + TSS region transcription start site region 6221
Tssr6222 1 34472781 to 34472792 11 + TSS region transcription start site region 6222
Tssr11219 1 34473047 to 34473058 11 - TSS region transcription start site region 11219
Tssr11220 1 34473158 to 34473181 23 - TSS region transcription start site region 11220
Tssr6223 1 34473213 to 34473245 32 + TSS region transcription start site region 6223
Tssr6224 1 34473263 to 34473296 33 + TSS region transcription start site region 6224
Tssr6225 1 34473314 to 34473322 8 + TSS region transcription start site region 6225
Gm32566 1 34474787 to 34485981 11194 + lncRNA gene predicted gene, 32566
4930568A12Rik 1 34477167 to 34485933 8766 - lincRNA gene RIKEN cDNA 4930568A12 gene
Tssr36 1 34485312 to 34485329 17 + TSS region transcription start site region 36
Cpgi120 1 34485572 to 34486047 475 CpG island CpG island 120
Tssr11221 1 34485924 to 34485946 22 - TSS region transcription start site region 11221
Tssr11222 1 34485948 to 34485967 19 - TSS region transcription start site region 11222
Tssr6226 1 34498369 to 34498441 72 + TSS region transcription start site region 6226
Prss39 1 34498430 to 34503062 4632 + protein coding gene protease, serine 39
Gm28416 1 34523716 to 34524007 291 - pseudogene predicted gene 28416
Tssr6227 1 34535626 to 34535657 31 + TSS region transcription start site region 6227
Cfc1 1 34535648 to 34544311 8663 + protein coding gene cripto, FRL-1, cryptic family 1
Gm28419 1 34538086 to 34538560 474 - pseudogene predicted gene 28419
Prss40 1 34543968 to 34560943 16975 - protein coding gene protease, serine 40
Cpgi121 1 34560767 to 34561011 244 CpG island CpG island 121
Tssr11223 1 34560916 to 34560930 14 - TSS region transcription start site region 11223
Tssr11224 1 34560933 to 34560966 33 - TSS region transcription start site region 11224
Tssr11225 1 34560975 to 34560982 7 - TSS region transcription start site region 11225
Gm19225 1 34571217 to 34571942 725 + pseudogene predicted gene, 19225
Cpgi122 1 34579133 to 34580216 1083 CpG island CpG island 122
1700101I19Rik 1 34579202 to 34579711 509 - antisense lncRNA gene RIKEN cDNA 1700101I19 gene
Tssr6228 1 34579512 to 34579523 11 + TSS region transcription start site region 6228
Amer3 1 34579657 to 34590944 11287 + protein coding gene APC membrane recruitment 3
Tssr6229 1 34579695 to 34579751 56 + TSS region transcription start site region 6229
Gm28418 1 34607297 to 34607719 422 - pseudogene predicted gene 28418
Gm36984 1 34610572 to 34610806 234 - pseudogene predicted gene, 36984
Gm29730 1 34610908 to 34612303 1395 - pseudogene predicted gene, 29730
AA619741 1 34635544 to 34636189 645 - pseudogene expressed sequence AA619741
Gm38647 1 34657236 to 34667004 9768 - lncRNA gene predicted gene, 38647
Cpgi123 1 34677806 to 34678793 987 CpG island CpG island 123
Tssr6230 1 34678149 to 34678175 26 + TSS region transcription start site region 6230
Tssr6231 1 34678176 to 34678213 37 + TSS region transcription start site region 6231
Gm32920 1 34685665 to 34688842 3177 - lncRNA gene predicted gene, 32920
Tssr6232 1 34697545 to 34697551 6 + TSS region transcription start site region 6232
W6q14 1 34721057 to 73937756 39216699 QTL weight 6 weeks QTL 14
Lgq5 1 34721057 to 73937756 39216699 QTL late growth QTL 5
Lvrq3 1 34721057 to 73937756 39216699 QTL liver weight QTL 3
W3q12 1 34721057 to 73937756 39216699 QTL weight 3 weeks QTL 12
D1Mit72 1 34721057 to 34721205 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 72
W10q6 1 34721057 to 73937756 39216699 QTL weight 10 weeks QTL 6
Estoq4 1 34721057 to 73937756 39216699 QTL embryo survival total QTL 4
Cpgi124 1 34723746 to 34723985 239 CpG island CpG island 124
Gm46087 1 34748272 to 34757061 8789 - lncRNA gene predicted gene, 46087
Cpgi125 1 34750164 to 34751395 1231 CpG island CpG island 125
Tssr6233 1 34750584 to 34750652 68 + TSS region transcription start site region 6233
Gm37224 1 34752775 to 34752922 147 + pseudogene predicted gene, 37224
Gm37845 1 34753123 to 34753477 354 + pseudogene predicted gene, 37845
Gm32790 1 34759936 to 34792553 32617 - lncRNA gene predicted gene, 32790
Cpgi126 1 34801633 to 34802304 671 CpG island CpG island 126
Tssr6234 1 34801708 to 34801776 68 + TSS region transcription start site region 6234
Arhgef4 1 34801722 to 34812754 11032 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 4
Cpgi127 1 34805957 to 34806507 550 CpG island CpG island 127
Gm38336 1 34809360 to 34811908 2548 - antisense lncRNA gene predicted gene, 38336
Fam168b 1 34813218 to 34843050 29832 - protein coding gene family with sequence similarity 168, member B
Tssr11226 1 34816896 to 34816929 33 - TSS region transcription start site region 11226
Tssr11227 1 34818072 to 34818099 27 - TSS region transcription start site region 11227
Tssr11228 1 34819755 to 34819769 14 - TSS region transcription start site region 11228
Tssr11229 1 34819927 to 34819964 37 - TSS region transcription start site region 11229
Gm37127 1 34823525 to 34826560 3035 + unclassified gene predicted gene, 37127
Cpgi128 1 34842429 to 34843489 1060 CpG island CpG island 128
Tssr11230 1 34842896 to 34842901 5 - TSS region transcription start site region 11230
Tssr11231 1 34842939 to 34842944 5 - TSS region transcription start site region 11231
Tssr11232 1 34842965 to 34842976 11 - TSS region transcription start site region 11232
Tssr11233 1 34842977 to 34842984 7 - TSS region transcription start site region 11233
Tssr11234 1 34842987 to 34843039 52 - TSS region transcription start site region 11234
Tssr11235 1 34843057 to 34843065 8 - TSS region transcription start site region 11235
Tssr6235 1 34849694 to 34849720 26 + TSS region transcription start site region 6235
Cpgi129 1 34849768 to 34850261 493 CpG island CpG island 129
Tssr6236 1 34849937 to 34849947 10 + TSS region transcription start site region 6236
Tssr6237 1 34849950 to 34850010 60 + TSS region transcription start site region 6237
Plekhb2 1 34849976 to 34879580 29604 + protein coding gene pleckstrin homology domain containing, family B (evectins) member 2
Tssr6238 1 34850312 to 34850363 51 + TSS region transcription start site region 6238
Tssr6239 1 34851832 to 34851862 30 + TSS region transcription start site region 6239
Tssr6240 1 34866179 to 34866200 21 + TSS region transcription start site region 6240
Kidq2 1 150318120 to 34721057 -115597063 QTL kidney weight QTL 2
Splq3 1 150318120 to 34721057 -115597063 QTL spleen weight QTL 3
W10q7 1 150318120 to 34721057 -115597063 QTL weight 10 weeks QTL 7