Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:34114433-34545307

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dst 1 33908225 to 34308661 400436 + protein coding gene dystonin
Mir6896 1 34117359 to 34117431 72 + miRNA gene microRNA 6896
Tssr6187 1 34121174 to 34121187 13 + TSS region transcription start site region 6187
Tssr6188 1 34121250 to 34121288 38 + TSS region transcription start site region 6188
Tssr6189 1 34121337 to 34121348 11 + TSS region transcription start site region 6189
Tssr34 1 34121363 to 34121372 9 + TSS region transcription start site region 34
Tssr6190 1 34121403 to 34121425 22 + TSS region transcription start site region 6190
Tssr6191 1 34121441 to 34121458 17 + TSS region transcription start site region 6191
Tssr6192 1 34121469 to 34121484 15 + TSS region transcription start site region 6192
Tssr6193 1 34124619 to 34124630 11 + TSS region transcription start site region 6193
D1Dcr23 1 34141676 to 34141771 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 23
Tssr11216 1 34144575 to 34144578 3 - TSS region transcription start site region 11216
D1Dcr50 1 34156460 to 34156555 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 50
Tssr6194 1 34160148 to 34160161 13 + TSS region transcription start site region 6194
Tssr6195 1 34160254 to 34160271 17 + TSS region transcription start site region 6195
Gm26788 1 34166315 to 34177976 11661 - lncRNA gene predicted gene, 26788
Tssr6196 1 34171112 to 34171149 37 + TSS region transcription start site region 6196
Cpgi113 1 34177952 to 34178343 391 CpG island CpG island 113
Tssr6197 1 34184107 to 34184112 5 + TSS region transcription start site region 6197
Tssr6198 1 34186869 to 34186881 12 + TSS region transcription start site region 6198
Tssr6199 1 34187796 to 34187808 12 + TSS region transcription start site region 6199
Tssr6200 1 34187875 to 34187879 4 + TSS region transcription start site region 6200
Tssr6201 1 34197239 to 34197254 15 + TSS region transcription start site region 6201
Tssr6202 1 34212944 to 34212994 50 + TSS region transcription start site region 6202
Tssr6203 1 34215284 to 34215298 14 + TSS region transcription start site region 6203
Tssr6204 1 34215301 to 34215313 12 + TSS region transcription start site region 6204
Tssr6205 1 34215324 to 34215332 8 + TSS region transcription start site region 6205
Tssr6206 1 34227913 to 34227924 11 + TSS region transcription start site region 6206
Cpgi114 1 34236112 to 34236793 681 CpG island CpG island 114
Tssr6207 1 34236544 to 34236570 26 + TSS region transcription start site region 6207
Tssr6208 1 34236585 to 34236602 17 + TSS region transcription start site region 6208
D630036G22Rik 1 34236595 to 34238820 2225 unclassified gene RIKEN cDNA D630036G22 gene
Tssr6209 1 34236614 to 34236652 38 + TSS region transcription start site region 6209
Tssr6210 1 34236683 to 34236694 11 + TSS region transcription start site region 6210
Tssr6211 1 34238094 to 34238106 12 + TSS region transcription start site region 6211
A930005N03Rik 1 34269882 to 34271128 1246 - unclassified non-coding RNA gene RIKEN cDNA A930005N03 gene
Tssr6212 1 34307768 to 34307783 15 + TSS region transcription start site region 6212
Tssr6213 1 34307929 to 34307942 13 + TSS region transcription start site region 6213
Gm37958 1 34329433 to 34330307 874 - lincRNA gene predicted gene, 37958
Gm37385 1 34350775 to 34351161 386 + unclassified gene predicted gene, 37385
Gm5266 1 34367374 to 34369003 1629 + pseudogene predicted gene 5266
Gm3052 1 34415050 to 34417986 2936 - pseudogene predicted gene 3052
Gm37233 1 34427002 to 34433264 6262 - lincRNA gene predicted gene, 37233
Cpgi115 1 34432848 to 34433306 458 CpG island CpG island 115
Mir5103 1 34433121 to 34433199 78 - miRNA gene microRNA 5103
Tssr11217 1 34433249 to 34433298 49 - TSS region transcription start site region 11217
n-TEttc1 1 34434812 to 34434883 71 - tRNA gene nuclear encoded tRNA glutamic acid 1 (anticodon TTC)
Cpgi116 1 34434889 to 34435227 338 CpG island CpG island 116
Tssr6214 1 34435092 to 34435106 14 + TSS region transcription start site region 6214
Ccdc115 1 34436670 to 34439672 3002 - protein coding gene coiled-coil domain containing 115
Cpgi117 1 34439128 to 34440365 1237 CpG island CpG island 117
Tssr11218 1 34439337 to 34439379 42 - TSS region transcription start site region 11218
Gm28306 1 34439511 to 34444730 5219 - antisense lncRNA gene predicted gene 28306
Imp4 1 34439829 to 34445747 5918 + protein coding gene IMP4, U3 small nucleolar ribonucleoprotein
Tssr6215 1 34439855 to 34439910 55 + TSS region transcription start site region 6215
Tssr6216 1 34443868 to 34443886 18 + TSS region transcription start site region 6216
Tssr6217 1 34444857 to 34444904 47 + TSS region transcription start site region 6217
Tssr6218 1 34447031 to 34447041 10 + TSS region transcription start site region 6218
Gm32504 1 34459009 to 34459827 818 - lncRNA gene predicted gene, 32504
Cpgi118 1 34459384 to 34460268 884 CpG island CpG island 118
Tssr35 1 34459724 to 34459740 16 + TSS region transcription start site region 35
Ptpn18 1 34459746 to 34473784 14038 + protein coding gene protein tyrosine phosphatase, non-receptor type 18
Tssr6219 1 34459756 to 34459814 58 + TSS region transcription start site region 6219
Gm28417 1 34468834 to 34473148 4314 - unclassified non-coding RNA gene predicted gene 28417
Cpgi119 1 34472565 to 34473380 815 CpG island CpG island 119
Tssr6220 1 34472714 to 34472757 43 + TSS region transcription start site region 6220
Tssr6221 1 34472765 to 34472772 7 + TSS region transcription start site region 6221
Tssr6222 1 34472781 to 34472792 11 + TSS region transcription start site region 6222
Tssr11219 1 34473047 to 34473058 11 - TSS region transcription start site region 11219
Tssr11220 1 34473158 to 34473181 23 - TSS region transcription start site region 11220
Tssr6223 1 34473213 to 34473245 32 + TSS region transcription start site region 6223
Tssr6224 1 34473263 to 34473296 33 + TSS region transcription start site region 6224
Tssr6225 1 34473314 to 34473322 8 + TSS region transcription start site region 6225
Gm32566 1 34474787 to 34485981 11194 + lncRNA gene predicted gene, 32566
4930568A12Rik 1 34477167 to 34485933 8766 - lincRNA gene RIKEN cDNA 4930568A12 gene
Tssr36 1 34485312 to 34485329 17 + TSS region transcription start site region 36
Cpgi120 1 34485572 to 34486047 475 CpG island CpG island 120
Tssr11221 1 34485924 to 34485946 22 - TSS region transcription start site region 11221
Tssr11222 1 34485948 to 34485967 19 - TSS region transcription start site region 11222
Tssr6226 1 34498369 to 34498441 72 + TSS region transcription start site region 6226
Prss39 1 34498430 to 34503062 4632 + protein coding gene protease, serine 39
Gm28416 1 34523716 to 34524007 291 - pseudogene predicted gene 28416
Tssr6227 1 34535626 to 34535657 31 + TSS region transcription start site region 6227
Cfc1 1 34535648 to 34544311 8663 + protein coding gene cripto, FRL-1, cryptic family 1
Gm28419 1 34538086 to 34538560 474 - pseudogene predicted gene 28419
Prss40 1 34543968 to 34560943 16975 - protein coding gene protease, serine 40