Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Dst | 1 | 400436 | + | protein coding gene | dystonin | |
Gm38157 | 1 | 1697 | + | unclassified gene | predicted gene, 38157 | |
Tssr6176 | 1 | 31 | + | TSS region | transcription start site region 6176 | |
Tssr6177 | 1 | 5 | + | TSS region | transcription start site region 6177 | |
Tssr6178 | 1 | 32 | + | TSS region | transcription start site region 6178 | |
Tssr11215 | 1 | 35 | - | TSS region | transcription start site region 11215 | |
Tssr6179 | 1 | 29 | + | TSS region | transcription start site region 6179 | |
Tssr6180 | 1 | 18 | + | TSS region | transcription start site region 6180 | |
Tssr6181 | 1 | 10 | + | TSS region | transcription start site region 6181 | |
Tssr6182 | 1 | 8 | + | TSS region | transcription start site region 6182 | |
Tssr6183 | 1 | 15 | + | TSS region | transcription start site region 6183 | |
Tssr6184 | 1 | 13 | + | TSS region | transcription start site region 6184 | |
Tssr6185 | 1 | 29 | + | TSS region | transcription start site region 6185 | |
Tssr6186 | 1 | 2 | + | TSS region | transcription start site region 6186 | |
D1Dcr22 | 1 | 96 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 22 | ||
Mir6896 | 1 | 72 | + | miRNA gene | microRNA 6896 | |
Tssr6187 | 1 | 13 | + | TSS region | transcription start site region 6187 | |
Tssr6188 | 1 | 38 | + | TSS region | transcription start site region 6188 | |
Tssr6189 | 1 | 11 | + | TSS region | transcription start site region 6189 | |
Tssr34 | 1 | 9 | + | TSS region | transcription start site region 34 | |
Tssr6190 | 1 | 22 | + | TSS region | transcription start site region 6190 | |
Tssr6191 | 1 | 17 | + | TSS region | transcription start site region 6191 | |
Tssr6192 | 1 | 15 | + | TSS region | transcription start site region 6192 | |
Tssr6193 | 1 | 11 | + | TSS region | transcription start site region 6193 | |
D1Dcr23 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 23 | ||
Tssr11216 | 1 | 3 | - | TSS region | transcription start site region 11216 | |
D1Dcr50 | 1 | 95 | DNA segment | DNA Segment, Chr 1, Derry C. Roopenian 50 | ||
Tssr6194 | 1 | 13 | + | TSS region | transcription start site region 6194 | |
Tssr6195 | 1 | 17 | + | TSS region | transcription start site region 6195 | |
Gm26788 | 1 | 11661 | - | lncRNA gene | predicted gene, 26788 | |
Tssr6196 | 1 | 37 | + | TSS region | transcription start site region 6196 | |
Cpgi113 | 1 | 391 | CpG island | CpG island 113 | ||
Tssr6197 | 1 | 5 | + | TSS region | transcription start site region 6197 | |
Tssr6198 | 1 | 12 | + | TSS region | transcription start site region 6198 | |
Tssr6199 | 1 | 12 | + | TSS region | transcription start site region 6199 | |
Tssr6200 | 1 | 4 | + | TSS region | transcription start site region 6200 | |
Tssr6201 | 1 | 15 | + | TSS region | transcription start site region 6201 | |
Tssr6202 | 1 | 50 | + | TSS region | transcription start site region 6202 | |
Tssr6203 | 1 | 14 | + | TSS region | transcription start site region 6203 | |
Tssr6204 | 1 | 12 | + | TSS region | transcription start site region 6204 | |
Tssr6205 | 1 | 8 | + | TSS region | transcription start site region 6205 | |
Tssr6206 | 1 | 11 | + | TSS region | transcription start site region 6206 | |
Cpgi114 | 1 | 681 | CpG island | CpG island 114 | ||
Tssr6207 | 1 | 26 | + | TSS region | transcription start site region 6207 | |
Tssr6208 | 1 | 17 | + | TSS region | transcription start site region 6208 | |
D630036G22Rik | 1 | 2225 | unclassified gene | RIKEN cDNA D630036G22 gene | ||
Tssr6209 | 1 | 38 | + | TSS region | transcription start site region 6209 | |
Tssr6210 | 1 | 11 | + | TSS region | transcription start site region 6210 | |
Tssr6211 | 1 | 12 | + | TSS region | transcription start site region 6211 | |
A930005N03Rik | 1 | 1246 | - | unclassified non-coding RNA gene | RIKEN cDNA A930005N03 gene | |
Tssr6212 | 1 | 15 | + | TSS region | transcription start site region 6212 | |
Tssr6213 | 1 | 13 | + | TSS region | transcription start site region 6213 | |
Gm37958 | 1 | 874 | - | lincRNA gene | predicted gene, 37958 | |
Gm37385 | 1 | 386 | + | unclassified gene | predicted gene, 37385 | |
Gm5266 | 1 | 1629 | + | pseudogene | predicted gene 5266 | |
Gm3052 | 1 | 2936 | - | pseudogene | predicted gene 3052 | |
Gm37233 | 1 | 6262 | - | lincRNA gene | predicted gene, 37233 | |
Cpgi115 | 1 | 458 | CpG island | CpG island 115 | ||
Mir5103 | 1 | 78 | - | miRNA gene | microRNA 5103 | |
Tssr11217 | 1 | 49 | - | TSS region | transcription start site region 11217 | |
n-TEttc1 | 1 | 71 | - | tRNA gene | nuclear encoded tRNA glutamic acid 1 (anticodon TTC) | |
Cpgi116 | 1 | 338 | CpG island | CpG island 116 | ||
Tssr6214 | 1 | 14 | + | TSS region | transcription start site region 6214 | |
Ccdc115 | 1 | 3002 | - | protein coding gene | coiled-coil domain containing 115 | |
Cpgi117 | 1 | 1237 | CpG island | CpG island 117 | ||
Tssr11218 | 1 | 42 | - | TSS region | transcription start site region 11218 | |
Gm28306 | 1 | 5219 | - | antisense lncRNA gene | predicted gene 28306 | |
Imp4 | 1 | 5918 | + | protein coding gene | IMP4, U3 small nucleolar ribonucleoprotein | |
Tssr6215 | 1 | 55 | + | TSS region | transcription start site region 6215 | |
Tssr6216 | 1 | 18 | + | TSS region | transcription start site region 6216 | |
Tssr6217 | 1 | 47 | + | TSS region | transcription start site region 6217 | |
Tssr6218 | 1 | 10 | + | TSS region | transcription start site region 6218 | |
Gm32504 | 1 | 818 | - | lncRNA gene | predicted gene, 32504 | |
Cpgi118 | 1 | 884 | CpG island | CpG island 118 | ||
Tssr35 | 1 | 16 | + | TSS region | transcription start site region 35 | |
Ptpn18 | 1 | 14038 | + | protein coding gene | protein tyrosine phosphatase, non-receptor type 18 | |
Tssr6219 | 1 | 58 | + | TSS region | transcription start site region 6219 | |
Gm28417 | 1 | 4314 | - | unclassified non-coding RNA gene | predicted gene 28417 | |
Cpgi119 | 1 | 815 | CpG island | CpG island 119 | ||
Tssr6220 | 1 | 43 | + | TSS region | transcription start site region 6220 | |
Tssr6221 | 1 | 7 | + | TSS region | transcription start site region 6221 | |
Tssr6222 | 1 | 11 | + | TSS region | transcription start site region 6222 | |
Tssr11219 | 1 | 11 | - | TSS region | transcription start site region 11219 | |
Tssr11220 | 1 | 23 | - | TSS region | transcription start site region 11220 | |
Tssr6223 | 1 | 32 | + | TSS region | transcription start site region 6223 | |
Tssr6224 | 1 | 33 | + | TSS region | transcription start site region 6224 | |
Tssr6225 | 1 | 8 | + | TSS region | transcription start site region 6225 | |
Gm32566 | 1 | 11194 | + | lncRNA gene | predicted gene, 32566 | |
4930568A12Rik | 1 | 8766 | - | lincRNA gene | RIKEN cDNA 4930568A12 gene | |
Tssr36 | 1 | 17 | + | TSS region | transcription start site region 36 | |
Cpgi120 | 1 | 475 | CpG island | CpG island 120 | ||
Tssr11221 | 1 | 22 | - | TSS region | transcription start site region 11221 | |
Tssr11222 | 1 | 19 | - | TSS region | transcription start site region 11222 | |
Tssr6226 | 1 | 72 | + | TSS region | transcription start site region 6226 | |
Prss39 | 1 | 4632 | + | protein coding gene | protease, serine 39 | |
Gm28416 | 1 | 291 | - | pseudogene | predicted gene 28416 | |
Tssr6227 | 1 | 31 | + | TSS region | transcription start site region 6227 | |
Cfc1 | 1 | 8663 | + | protein coding gene | cripto, FRL-1, cryptic family 1 | |
Gm28419 | 1 | 474 | - | pseudogene | predicted gene 28419 | |
Prss40 | 1 | 16975 | - | protein coding gene | protease, serine 40 | |
Cpgi121 | 1 | 244 | CpG island | CpG island 121 | ||
Tssr11223 | 1 | 14 | - | TSS region | transcription start site region 11223 | |
Tssr11224 | 1 | 33 | - | TSS region | transcription start site region 11224 | |
Tssr11225 | 1 | 7 | - | TSS region | transcription start site region 11225 | |
Gm19225 | 1 | 725 | + | pseudogene | predicted gene, 19225 | |
Cpgi122 | 1 | 1083 | CpG island | CpG island 122 | ||
1700101I19Rik | 1 | 509 | - | antisense lncRNA gene | RIKEN cDNA 1700101I19 gene | |
Tssr6228 | 1 | 11 | + | TSS region | transcription start site region 6228 | |
Amer3 | 1 | 11287 | + | protein coding gene | APC membrane recruitment 3 | |
Tssr6229 | 1 | 56 | + | TSS region | transcription start site region 6229 | |
Gm28418 | 1 | 422 | - | pseudogene | predicted gene 28418 | |
Gm36984 | 1 | 234 | - | pseudogene | predicted gene, 36984 | |
Gm29730 | 1 | 1395 | - | pseudogene | predicted gene, 29730 | |
AA619741 | 1 | 645 | - | pseudogene | expressed sequence AA619741 | |
Gm38647 | 1 | 9768 | - | lncRNA gene | predicted gene, 38647 | |
Cpgi123 | 1 | 987 | CpG island | CpG island 123 | ||
Tssr6230 | 1 | 26 | + | TSS region | transcription start site region 6230 | |
Tssr6231 | 1 | 37 | + | TSS region | transcription start site region 6231 | |
Gm32920 | 1 | 3177 | - | lncRNA gene | predicted gene, 32920 | |
Tssr6232 | 1 | 6 | + | TSS region | transcription start site region 6232 | |
Estoq4 | 1 | 39216699 | QTL | embryo survival total QTL 4 | ||
D1Mit72 | 1 | 148 | DNA segment | DNA segment, Chr 1, Massachusetts Institute of Technology 72 | ||
Lvrq3 | 1 | 39216699 | QTL | liver weight QTL 3 | ||
W6q14 | 1 | 39216699 | QTL | weight 6 weeks QTL 14 | ||
Lgq5 | 1 | 39216699 | QTL | late growth QTL 5 | ||
W10q6 | 1 | 39216699 | QTL | weight 10 weeks QTL 6 | ||
W3q12 | 1 | 39216699 | QTL | weight 3 weeks QTL 12 | ||
Cpgi124 | 1 | 239 | CpG island | CpG island 124 | ||
Gm46087 | 1 | 8789 | - | lncRNA gene | predicted gene, 46087 | |
Cpgi125 | 1 | 1231 | CpG island | CpG island 125 | ||
Tssr6233 | 1 | 68 | + | TSS region | transcription start site region 6233 | |
Gm37224 | 1 | 147 | + | pseudogene | predicted gene, 37224 | |
Gm37845 | 1 | 354 | + | pseudogene | predicted gene, 37845 | |
Gm32790 | 1 | 32617 | - | lncRNA gene | predicted gene, 32790 | |
Cpgi126 | 1 | 671 | CpG island | CpG island 126 | ||
Tssr6234 | 1 | 68 | + | TSS region | transcription start site region 6234 | |
Arhgef4 | 1 | 11032 | + | protein coding gene | Rho guanine nucleotide exchange factor (GEF) 4 | |
Cpgi127 | 1 | 550 | CpG island | CpG island 127 | ||
Gm38336 | 1 | 2548 | - | antisense lncRNA gene | predicted gene, 38336 | |
Fam168b | 1 | 29832 | - | protein coding gene | family with sequence similarity 168, member B | |
Tssr11226 | 1 | 33 | - | TSS region | transcription start site region 11226 | |
Tssr11227 | 1 | 27 | - | TSS region | transcription start site region 11227 | |
Tssr11228 | 1 | 14 | - | TSS region | transcription start site region 11228 | |
Tssr11229 | 1 | 37 | - | TSS region | transcription start site region 11229 | |
Gm37127 | 1 | 3035 | + | unclassified gene | predicted gene, 37127 | |
Cpgi128 | 1 | 1060 | CpG island | CpG island 128 | ||
Tssr11230 | 1 | 5 | - | TSS region | transcription start site region 11230 | |
Tssr11231 | 1 | 5 | - | TSS region | transcription start site region 11231 | |
Tssr11232 | 1 | 11 | - | TSS region | transcription start site region 11232 | |
Tssr11233 | 1 | 7 | - | TSS region | transcription start site region 11233 | |
Tssr11234 | 1 | 52 | - | TSS region | transcription start site region 11234 | |
Tssr11235 | 1 | 8 | - | TSS region | transcription start site region 11235 | |
Tssr6235 | 1 | 26 | + | TSS region | transcription start site region 6235 | |
Cpgi129 | 1 | 493 | CpG island | CpG island 129 | ||
Tssr6236 | 1 | 10 | + | TSS region | transcription start site region 6236 | |
Tssr6237 | 1 | 60 | + | TSS region | transcription start site region 6237 | |
Plekhb2 | 1 | 29604 | + | protein coding gene | pleckstrin homology domain containing, family B (evectins) member 2 | |
Tssr6238 | 1 | 51 | + | TSS region | transcription start site region 6238 | |
Tssr6239 | 1 | 30 | + | TSS region | transcription start site region 6239 | |
Tssr6240 | 1 | 21 | + | TSS region | transcription start site region 6240 | |
W10q7 | 1 | -115597063 | QTL | weight 10 weeks QTL 7 | ||
Kidq2 | 1 | -115597063 | QTL | kidney weight QTL 2 | ||
Splq3 | 1 | -115597063 | QTL | spleen weight QTL 3 |