Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:33970948-35000967

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dst 1 33908225 to 34308661 400436 + protein coding gene dystonin
Tssr6162 1 33974651 to 33974671 20 + TSS region transcription start site region 6162
Tssr6163 1 33974730 to 33974737 7 + TSS region transcription start site region 6163
Tssr6164 1 33974744 to 33974748 4 + TSS region transcription start site region 6164
Tssr6165 1 33975921 to 33975924 3 + TSS region transcription start site region 6165
Gm23792 1 33981410 to 33981502 92 - snRNA gene predicted gene, 23792
30.MHAa96c6.seq 1 33989199 to 33989345 146 DNA segment DNA segment, 30.MHAa96c6.seq
Tssr6166 1 33991010 to 33991018 8 + TSS region transcription start site region 6166
Tssr6167 1 34005872 to 34005908 36 + TSS region transcription start site region 6167
Cpgi111 1 34005913 to 34006301 388 CpG island CpG island 111
Tssr6168 1 34005918 to 34005943 25 + TSS region transcription start site region 6168
Cpgi112 1 34010918 to 34012179 1261 CpG island CpG island 112
Tssr6169 1 34011228 to 34011250 22 + TSS region transcription start site region 6169
Tssr6170 1 34011257 to 34011268 11 + TSS region transcription start site region 6170
Tssr6171 1 34011550 to 34011559 9 + TSS region transcription start site region 6171
Tssr6172 1 34011564 to 34011602 38 + TSS region transcription start site region 6172
Tssr6173 1 34022711 to 34022723 12 + TSS region transcription start site region 6173
Tssr6174 1 34022756 to 34022770 14 + TSS region transcription start site region 6174
Tssr6175 1 34022790 to 34022803 13 + TSS region transcription start site region 6175
Gm38157 1 34032100 to 34033797 1697 + unclassified gene predicted gene, 38157
Tssr6176 1 34053657 to 34053688 31 + TSS region transcription start site region 6176
Tssr6177 1 34065762 to 34065767 5 + TSS region transcription start site region 6177
Tssr6178 1 34068569 to 34068601 32 + TSS region transcription start site region 6178
Tssr11215 1 34073844 to 34073879 35 - TSS region transcription start site region 11215
Tssr6179 1 34077190 to 34077219 29 + TSS region transcription start site region 6179
Tssr6180 1 34077227 to 34077245 18 + TSS region transcription start site region 6180
Tssr6181 1 34077280 to 34077290 10 + TSS region transcription start site region 6181
Tssr6182 1 34077294 to 34077302 8 + TSS region transcription start site region 6182
Tssr6183 1 34089264 to 34089279 15 + TSS region transcription start site region 6183
Tssr6184 1 34089283 to 34089296 13 + TSS region transcription start site region 6184
Tssr6185 1 34097265 to 34097294 29 + TSS region transcription start site region 6185
Tssr6186 1 34099738 to 34099740 2 + TSS region transcription start site region 6186
D1Dcr22 1 34112282 to 34112378 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 22
Mir6896 1 34117359 to 34117431 72 + miRNA gene microRNA 6896
Tssr6187 1 34121174 to 34121187 13 + TSS region transcription start site region 6187
Tssr6188 1 34121250 to 34121288 38 + TSS region transcription start site region 6188
Tssr6189 1 34121337 to 34121348 11 + TSS region transcription start site region 6189
Tssr34 1 34121363 to 34121372 9 + TSS region transcription start site region 34
Tssr6190 1 34121403 to 34121425 22 + TSS region transcription start site region 6190
Tssr6191 1 34121441 to 34121458 17 + TSS region transcription start site region 6191
Tssr6192 1 34121469 to 34121484 15 + TSS region transcription start site region 6192
Tssr6193 1 34124619 to 34124630 11 + TSS region transcription start site region 6193
D1Dcr23 1 34141676 to 34141771 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 23
Tssr11216 1 34144575 to 34144578 3 - TSS region transcription start site region 11216
D1Dcr50 1 34156460 to 34156555 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 50
Tssr6194 1 34160148 to 34160161 13 + TSS region transcription start site region 6194
Tssr6195 1 34160254 to 34160271 17 + TSS region transcription start site region 6195
Gm26788 1 34166315 to 34177976 11661 - lncRNA gene predicted gene, 26788
Tssr6196 1 34171112 to 34171149 37 + TSS region transcription start site region 6196
Cpgi113 1 34177952 to 34178343 391 CpG island CpG island 113
Tssr6197 1 34184107 to 34184112 5 + TSS region transcription start site region 6197
Tssr6198 1 34186869 to 34186881 12 + TSS region transcription start site region 6198
Tssr6199 1 34187796 to 34187808 12 + TSS region transcription start site region 6199
Tssr6200 1 34187875 to 34187879 4 + TSS region transcription start site region 6200
Tssr6201 1 34197239 to 34197254 15 + TSS region transcription start site region 6201
Tssr6202 1 34212944 to 34212994 50 + TSS region transcription start site region 6202
Tssr6203 1 34215284 to 34215298 14 + TSS region transcription start site region 6203
Tssr6204 1 34215301 to 34215313 12 + TSS region transcription start site region 6204
Tssr6205 1 34215324 to 34215332 8 + TSS region transcription start site region 6205
Tssr6206 1 34227913 to 34227924 11 + TSS region transcription start site region 6206
Cpgi114 1 34236112 to 34236793 681 CpG island CpG island 114
Tssr6207 1 34236544 to 34236570 26 + TSS region transcription start site region 6207
Tssr6208 1 34236585 to 34236602 17 + TSS region transcription start site region 6208
D630036G22Rik 1 34236595 to 34238820 2225 unclassified gene RIKEN cDNA D630036G22 gene
Tssr6209 1 34236614 to 34236652 38 + TSS region transcription start site region 6209
Tssr6210 1 34236683 to 34236694 11 + TSS region transcription start site region 6210
Tssr6211 1 34238094 to 34238106 12 + TSS region transcription start site region 6211
A930005N03Rik 1 34269882 to 34271128 1246 - unclassified non-coding RNA gene RIKEN cDNA A930005N03 gene
Tssr6212 1 34307768 to 34307783 15 + TSS region transcription start site region 6212
Tssr6213 1 34307929 to 34307942 13 + TSS region transcription start site region 6213
Gm37958 1 34329433 to 34330307 874 - lincRNA gene predicted gene, 37958
Gm37385 1 34350775 to 34351161 386 + unclassified gene predicted gene, 37385
Gm5266 1 34367374 to 34369003 1629 + pseudogene predicted gene 5266
Gm3052 1 34415050 to 34417986 2936 - pseudogene predicted gene 3052
Gm37233 1 34427002 to 34433264 6262 - lincRNA gene predicted gene, 37233
Cpgi115 1 34432848 to 34433306 458 CpG island CpG island 115
Mir5103 1 34433121 to 34433199 78 - miRNA gene microRNA 5103
Tssr11217 1 34433249 to 34433298 49 - TSS region transcription start site region 11217
n-TEttc1 1 34434812 to 34434883 71 - tRNA gene nuclear encoded tRNA glutamic acid 1 (anticodon TTC)
Cpgi116 1 34434889 to 34435227 338 CpG island CpG island 116
Tssr6214 1 34435092 to 34435106 14 + TSS region transcription start site region 6214
Ccdc115 1 34436670 to 34439672 3002 - protein coding gene coiled-coil domain containing 115
Cpgi117 1 34439128 to 34440365 1237 CpG island CpG island 117
Tssr11218 1 34439337 to 34439379 42 - TSS region transcription start site region 11218
Gm28306 1 34439511 to 34444730 5219 - antisense lncRNA gene predicted gene 28306
Imp4 1 34439829 to 34445747 5918 + protein coding gene IMP4, U3 small nucleolar ribonucleoprotein
Tssr6215 1 34439855 to 34439910 55 + TSS region transcription start site region 6215
Tssr6216 1 34443868 to 34443886 18 + TSS region transcription start site region 6216
Tssr6217 1 34444857 to 34444904 47 + TSS region transcription start site region 6217
Tssr6218 1 34447031 to 34447041 10 + TSS region transcription start site region 6218
Gm32504 1 34459009 to 34459827 818 - lncRNA gene predicted gene, 32504
Cpgi118 1 34459384 to 34460268 884 CpG island CpG island 118
Tssr35 1 34459724 to 34459740 16 + TSS region transcription start site region 35
Ptpn18 1 34459746 to 34473784 14038 + protein coding gene protein tyrosine phosphatase, non-receptor type 18
Tssr6219 1 34459756 to 34459814 58 + TSS region transcription start site region 6219
Gm28417 1 34468834 to 34473148 4314 - unclassified non-coding RNA gene predicted gene 28417
Cpgi119 1 34472565 to 34473380 815 CpG island CpG island 119
Tssr6220 1 34472714 to 34472757 43 + TSS region transcription start site region 6220
Tssr6221 1 34472765 to 34472772 7 + TSS region transcription start site region 6221
Tssr6222 1 34472781 to 34472792 11 + TSS region transcription start site region 6222
Tssr11219 1 34473047 to 34473058 11 - TSS region transcription start site region 11219
Tssr11220 1 34473158 to 34473181 23 - TSS region transcription start site region 11220
Tssr6223 1 34473213 to 34473245 32 + TSS region transcription start site region 6223
Tssr6224 1 34473263 to 34473296 33 + TSS region transcription start site region 6224
Tssr6225 1 34473314 to 34473322 8 + TSS region transcription start site region 6225
Gm32566 1 34474787 to 34485981 11194 + lncRNA gene predicted gene, 32566
4930568A12Rik 1 34477167 to 34485933 8766 - lincRNA gene RIKEN cDNA 4930568A12 gene
Tssr36 1 34485312 to 34485329 17 + TSS region transcription start site region 36
Cpgi120 1 34485572 to 34486047 475 CpG island CpG island 120
Tssr11221 1 34485924 to 34485946 22 - TSS region transcription start site region 11221
Tssr11222 1 34485948 to 34485967 19 - TSS region transcription start site region 11222
Tssr6226 1 34498369 to 34498441 72 + TSS region transcription start site region 6226
Prss39 1 34498430 to 34503062 4632 + protein coding gene protease, serine 39
Gm28416 1 34523716 to 34524007 291 - pseudogene predicted gene 28416
Tssr6227 1 34535626 to 34535657 31 + TSS region transcription start site region 6227
Cfc1 1 34535648 to 34544311 8663 + protein coding gene cripto, FRL-1, cryptic family 1
Gm28419 1 34538086 to 34538560 474 - pseudogene predicted gene 28419
Prss40 1 34543968 to 34560943 16975 - protein coding gene protease, serine 40
Cpgi121 1 34560767 to 34561011 244 CpG island CpG island 121
Tssr11223 1 34560916 to 34560930 14 - TSS region transcription start site region 11223
Tssr11224 1 34560933 to 34560966 33 - TSS region transcription start site region 11224
Tssr11225 1 34560975 to 34560982 7 - TSS region transcription start site region 11225
Gm19225 1 34571217 to 34571942 725 + pseudogene predicted gene, 19225
Cpgi122 1 34579133 to 34580216 1083 CpG island CpG island 122
1700101I19Rik 1 34579202 to 34579711 509 - antisense lncRNA gene RIKEN cDNA 1700101I19 gene
Tssr6228 1 34579512 to 34579523 11 + TSS region transcription start site region 6228
Amer3 1 34579657 to 34590944 11287 + protein coding gene APC membrane recruitment 3
Tssr6229 1 34579695 to 34579751 56 + TSS region transcription start site region 6229
Gm28418 1 34607297 to 34607719 422 - pseudogene predicted gene 28418
Gm36984 1 34610572 to 34610806 234 - pseudogene predicted gene, 36984
Gm29730 1 34610908 to 34612303 1395 - pseudogene predicted gene, 29730
AA619741 1 34635544 to 34636189 645 - pseudogene expressed sequence AA619741
Gm38647 1 34657236 to 34667004 9768 - lncRNA gene predicted gene, 38647
Cpgi123 1 34677806 to 34678793 987 CpG island CpG island 123
Tssr6230 1 34678149 to 34678175 26 + TSS region transcription start site region 6230
Tssr6231 1 34678176 to 34678213 37 + TSS region transcription start site region 6231
Gm32920 1 34685665 to 34688842 3177 - lncRNA gene predicted gene, 32920
Tssr6232 1 34697545 to 34697551 6 + TSS region transcription start site region 6232
W6q14 1 34721057 to 73937756 39216699 QTL weight 6 weeks QTL 14
Lgq5 1 34721057 to 73937756 39216699 QTL late growth QTL 5
Lvrq3 1 34721057 to 73937756 39216699 QTL liver weight QTL 3
W3q12 1 34721057 to 73937756 39216699 QTL weight 3 weeks QTL 12
W10q6 1 34721057 to 73937756 39216699 QTL weight 10 weeks QTL 6
Estoq4 1 34721057 to 73937756 39216699 QTL embryo survival total QTL 4
D1Mit72 1 34721057 to 34721205 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 72
Cpgi124 1 34723746 to 34723985 239 CpG island CpG island 124
Gm46087 1 34748272 to 34757061 8789 - lncRNA gene predicted gene, 46087
Cpgi125 1 34750164 to 34751395 1231 CpG island CpG island 125
Tssr6233 1 34750584 to 34750652 68 + TSS region transcription start site region 6233
Gm37224 1 34752775 to 34752922 147 + pseudogene predicted gene, 37224
Gm37845 1 34753123 to 34753477 354 + pseudogene predicted gene, 37845
Gm32790 1 34759936 to 34792553 32617 - lncRNA gene predicted gene, 32790
Cpgi126 1 34801633 to 34802304 671 CpG island CpG island 126
Tssr6234 1 34801708 to 34801776 68 + TSS region transcription start site region 6234
Arhgef4 1 34801722 to 34812754 11032 + protein coding gene Rho guanine nucleotide exchange factor (GEF) 4
Cpgi127 1 34805957 to 34806507 550 CpG island CpG island 127
Gm38336 1 34809360 to 34811908 2548 - antisense lncRNA gene predicted gene, 38336
Fam168b 1 34813218 to 34843050 29832 - protein coding gene family with sequence similarity 168, member B
Tssr11226 1 34816896 to 34816929 33 - TSS region transcription start site region 11226
Tssr11227 1 34818072 to 34818099 27 - TSS region transcription start site region 11227
Tssr11228 1 34819755 to 34819769 14 - TSS region transcription start site region 11228
Tssr11229 1 34819927 to 34819964 37 - TSS region transcription start site region 11229
Gm37127 1 34823525 to 34826560 3035 + unclassified gene predicted gene, 37127
Cpgi128 1 34842429 to 34843489 1060 CpG island CpG island 128
Tssr11230 1 34842896 to 34842901 5 - TSS region transcription start site region 11230
Tssr11231 1 34842939 to 34842944 5 - TSS region transcription start site region 11231
Tssr11232 1 34842965 to 34842976 11 - TSS region transcription start site region 11232
Tssr11233 1 34842977 to 34842984 7 - TSS region transcription start site region 11233
Tssr11234 1 34842987 to 34843039 52 - TSS region transcription start site region 11234
Tssr11235 1 34843057 to 34843065 8 - TSS region transcription start site region 11235
Tssr6235 1 34849694 to 34849720 26 + TSS region transcription start site region 6235
Cpgi129 1 34849768 to 34850261 493 CpG island CpG island 129
Tssr6236 1 34849937 to 34849947 10 + TSS region transcription start site region 6236
Tssr6237 1 34849950 to 34850010 60 + TSS region transcription start site region 6237
Plekhb2 1 34849976 to 34879580 29604 + protein coding gene pleckstrin homology domain containing, family B (evectins) member 2
Tssr6238 1 34850312 to 34850363 51 + TSS region transcription start site region 6238
Tssr6239 1 34851832 to 34851862 30 + TSS region transcription start site region 6239
Tssr6240 1 34866179 to 34866200 21 + TSS region transcription start site region 6240
Gm19430 1 34928509 to 34930645 2136 + pseudogene predicted gene, 19430
Cpgi130 1 34929538 to 34930674 1136 CpG island CpG island 130
D1Mit121 1 34942404 to 34942660 256 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 121
D1Dcr51 1 34955162 to 34955257 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 51
Gm37670 1 34969627 to 34969855 228 - pseudogene predicted gene, 37670
Gm8009 1 34970065 to 34970500 435 + pseudogene predicted gene 8009
Gm38027 1 34985656 to 34985890 234 + pseudogene predicted gene, 38027
W10q7 1 150318120 to 34721057 -115597063 QTL weight 10 weeks QTL 7
Splq3 1 150318120 to 34721057 -115597063 QTL spleen weight QTL 3
Kidq2 1 150318120 to 34721057 -115597063 QTL kidney weight QTL 2