Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:3370172-5020255

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xkr4 1 3205901 to 3671498 465597 - protein coding gene X-linked Kx blood group related 4
Gm39585 1 3361552 to 3377812 16260 + lncRNA gene predicted gene, 39585
Gm37363 1 3375556 to 3377788 2232 - unclassified gene predicted gene, 37363
Tssr10866 1 3377786 to 3377789 3 - TSS region transcription start site region 10866
Gm37686 1 3464977 to 3467285 2308 - unclassified gene predicted gene, 37686
Gm1992 1 3466587 to 3513553 46966 + antisense lncRNA gene predicted gene 1992
Tssr10867 1 3489149 to 3489153 4 - TSS region transcription start site region 10867
Gm37329 1 3512451 to 3514507 2056 - unclassified gene predicted gene, 37329
Cpgi1 1 3531623 to 3531920 297 CpG island CpG island 1
Gm7341 1 3531795 to 3532720 925 + pseudogene predicted gene 7341
Gm38148 1 3592892 to 3595903 3011 - unclassified gene predicted gene, 38148
Gm19938 1 3647309 to 3658904 11595 - sense intronic lncRNA gene predicted gene, 19938
D1Mit475 1 3652137 to 3652249 112 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 475
Tssr10868 1 3654895 to 3654899 4 - TSS region transcription start site region 10868
Tssr10869 1 3667834 to 3667838 4 - TSS region transcription start site region 10869
Cpgi2 1 3670453 to 3672677 2224 CpG island CpG island 2
Tssr10870 1 3671671 to 3671733 62 - TSS region transcription start site region 10870
Tssr10871 1 3671770 to 3671808 38 - TSS region transcription start site region 10871
Tssr5795 1 3674608 to 3674612 4 + TSS region transcription start site region 5795
Gm10568 1 3680155 to 3681788 1633 + unclassified gene predicted gene 10568
Gm38385 1 3752010 to 3754360 2350 + unclassified gene predicted gene, 38385
Gm27396 1 3783876 to 3783933 57 - snRNA gene predicted gene, 27396
Tssr5796 1 3873210 to 3873235 25 + TSS region transcription start site region 5796
Gm37381 1 3905739 to 3986215 80476 - lincRNA gene predicted gene, 37381
Gm38717 1 4115673 to 4243365 127692 - protein coding gene predicted gene, 38717
D1Mit242.1 1 4195036 to 4195150 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 242.1
D1Mit242 1 4195172 to 4195255 83 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 242
Gm6101 1 4256234 to 4260519 4285 - pseudogene predicted gene 6101
Rp1 1 4290846 to 4409266 118420 - protein coding gene retinitis pigmentosa 1 (human)
Cpgi3 1 4352320 to 4352566 246 CpG island CpG island 3
Tssr10872 1 4360237 to 4360246 9 - TSS region transcription start site region 10872
Tssr10873 1 4360256 to 4360312 56 - TSS region transcription start site region 10873
Gm37483 1 4363346 to 4364829 1483 - unclassified gene predicted gene, 37483
Tssr10874 1 4409223 to 4409240 17 - TSS region transcription start site region 10874
Tssr10875 1 4409247 to 4409275 28 - TSS region transcription start site region 10875
Tssr10876 1 4409278 to 4409290 12 - TSS region transcription start site region 10876
Sox17 1 4490931 to 4497354 6423 - protein coding gene SRY (sex determining region Y)-box 17
Cpgi4 1 4491620 to 4493791 2171 CpG island CpG island 4
Tssr10877 1 4493598 to 4493614 16 - TSS region transcription start site region 10877
Tssr10878 1 4496372 to 4496389 17 - TSS region transcription start site region 10878
Tssr10879 1 4496400 to 4496420 20 - TSS region transcription start site region 10879
Tssr10880 1 4496424 to 4496446 22 - TSS region transcription start site region 10880
Tssr10881 1 4496449 to 4496476 27 - TSS region transcription start site region 10881
Tssr10882 1 4496513 to 4496531 18 - TSS region transcription start site region 10882
Gm37587 1 4496551 to 4499558 3007 + unclassified non-coding RNA gene predicted gene, 37587
Cpgi5 1 4496763 to 4497717 954 CpG island CpG island 5
Tssr10883 1 4497366 to 4497391 25 - TSS region transcription start site region 10883
Tssr10884 1 4497395 to 4497409 14 - TSS region transcription start site region 10884
Tssr5797 1 4522816 to 4522864 48 + TSS region transcription start site region 5797
Gm7357 1 4522905 to 4526737 3832 + pseudogene predicted gene 7357
Gm22307 1 4529017 to 4529123 106 + snRNA gene predicted gene, 22307
Gm38076 1 4534837 to 4535286 449 - pseudogene predicted gene, 38076
D1Mit427 1 4536568 to 4536681 113 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 427
Cpgi6 1 4571499 to 4572209 710 CpG island CpG island 6
Gm37323 1 4583129 to 4586252 3123 - lincRNA gene predicted gene, 37323
Gm39586 1 4595057 to 4602832 7775 + lncRNA gene predicted gene, 39586
Tssr10885 1 4602168 to 4602169 1 - TSS region transcription start site region 10885
Gm46082 1 4603255 to 4606521 3266 - lncRNA gene predicted gene, 46082
Gm29874 1 4608937 to 4617805 8868 + lncRNA gene predicted gene, 29874
Tssr10886 1 4608982 to 4609021 39 - TSS region transcription start site region 10886
Gm7369 1 4610471 to 4611406 935 + pseudogene predicted gene 7369
Cpgi7 1 4688129 to 4688477 348 CpG island CpG island 7
Gm6085 1 4688569 to 4689409 840 - pseudogene predicted gene 6085
Gm6119 1 4692219 to 4693424 1205 - pseudogene predicted gene 6119
Tssr5798 1 4722855 to 4722893 38 + TSS region transcription start site region 5798
Gm25493 1 4723277 to 4723379 102 - snRNA gene predicted gene, 25493
Gm2053 1 4735050 to 4735679 629 - pseudogene predicted gene 2053
Tssr5799 1 4771094 to 4771122 28 + TSS region transcription start site region 5799
Gm6123 1 4771131 to 4772199 1068 + pseudogene predicted gene 6123
Mrpl15 1 4773206 to 4785739 12533 - protein coding gene mitochondrial ribosomal protein L15
Gm37144 1 4778063 to 4779212 1149 - unclassified gene predicted gene, 37144
Cpgi8 1 4785380 to 4785997 617 CpG island CpG island 8
Tssr10887 1 4785671 to 4785744 73 - TSS region transcription start site region 10887
Tssr5800 1 4785772 to 4785802 30 + TSS region transcription start site region 5800
A930006A01Rik 1 4785777 to 4786629 852 unclassified gene RIKEN cDNA A930006A01 gene
Cpgi9 1 4807441 to 4808294 853 CpG island CpG island 9
Lypla1 1 4807560 to 4846739 39179 + protein coding gene lysophospholipase 1
Tssr5801 1 4807642 to 4807672 30 + TSS region transcription start site region 5801
Tssr10888 1 4807660 to 4807702 42 - TSS region transcription start site region 10888
Tssr10889 1 4807718 to 4807747 29 - TSS region transcription start site region 10889
Tssr5802 1 4807866 to 4807928 62 + TSS region transcription start site region 5802
Gm37988 1 4807892 to 4886770 78878 + protein coding gene predicted gene, 37988
Tssr5803 1 4808246 to 4808287 41 + TSS region transcription start site region 5803
Tssr5804 1 4828575 to 4828616 41 + TSS region transcription start site region 5804
D1Ertd164e 1 4830931 to 4831167 236 DNA segment DNA segment, Chr 1, ERATO Doi 164, expressed
Tssr5805 1 4845593 to 4845604 11 + TSS region transcription start site region 5805
Cpgi10 1 4857408 to 4858475 1067 CpG island CpG island 10
Tssr10890 1 4857564 to 4857601 37 - TSS region transcription start site region 10890
Tssr5806 1 4857687 to 4857701 14 + TSS region transcription start site region 5806
Tssr5807 1 4857720 to 4857731 11 + TSS region transcription start site region 5807
Tssr5808 1 4857760 to 4857796 36 + TSS region transcription start site region 5808
Tcea1 1 4857814 to 4897909 40095 + protein coding gene transcription elongation factor A (SII) 1
Tssr5809 1 4858016 to 4858048 32 + TSS region transcription start site region 5809
Tssr5810 1 4858284 to 4858308 24 + TSS region transcription start site region 5810
Gm6104 1 4880049 to 4880651 602 - pseudogene predicted gene 6104
Tssr10891 1 4880693 to 4880699 6 - TSS region transcription start site region 10891
Gm37277 1 4905751 to 4906861 1110 - unclassified gene predicted gene, 37277
Rgs20 1 4909576 to 5070285 160709 - protein coding gene regulator of G-protein signaling 20
Tssr10892 1 4910240 to 4910244 4 - TSS region transcription start site region 10892
Gm17100 1 4927028 to 4927299 271 - pseudogene predicted gene 17100
Gm37079 1 4938576 to 4940710 2134 - unclassified gene predicted gene, 37079
Gm16041 1 4970857 to 4976820 5963 + antisense lncRNA gene predicted gene 16041
Tssr10893 1 4972390 to 4972416 26 - TSS region transcription start site region 10893
Cpgi11 1 5018203 to 5021131 2928 CpG island CpG island 11
Tssr10894 1 5019342 to 5019397 55 - TSS region transcription start site region 10894