Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:33454744-34494748

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prim2 1 33453810 to 33669795 215985 - protein coding gene DNA primase, p58 subunit
Tssr11186 1 33480513 to 33480530 17 - TSS region transcription start site region 11186
Gm29228 1 33482101 to 33482518 417 + pseudogene predicted gene 29228
Gm39618 1 33522521 to 33530620 8099 + lncRNA gene predicted gene, 39618
Tssr6147 1 33578986 to 33579003 17 + TSS region transcription start site region 6147
D1Mit277 1 33591425 to 33591574 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 277
Tssr11187 1 33605825 to 33605833 8 - TSS region transcription start site region 11187
Gm37618 1 33613758 to 33616832 3074 - unclassified gene predicted gene, 37618
Tssr11188 1 33621416 to 33621423 7 - TSS region transcription start site region 11188
Cpgi102 1 33637957 to 33638256 299 CpG island CpG island 102
Tssr11189 1 33638004 to 33638020 16 - TSS region transcription start site region 11189
Tssr11190 1 33649153 to 33649173 20 - TSS region transcription start site region 11190
Gm17813 1 33657781 to 33658108 327 + pseudogene predicted gene, 17813
Cpgi103 1 33669484 to 33670637 1153 CpG island CpG island 103
Tssr11191 1 33669728 to 33669739 11 - TSS region transcription start site region 11191
Tssr11192 1 33669745 to 33669792 47 - TSS region transcription start site region 11192
Tssr11193 1 33669795 to 33669806 11 - TSS region transcription start site region 11193
Tssr6148 1 33669816 to 33669856 40 + TSS region transcription start site region 6148
1700001G17Rik 1 33669824 to 33670712 888 + lncRNA gene RIKEN cDNA 1700001G17 gene
Tssr6149 1 33669861 to 33669880 19 + TSS region transcription start site region 6149
Gm38173 1 33671915 to 33674228 2313 - unclassified gene predicted gene, 38173
Gm32229 1 33714183 to 33719895 5712 - lncRNA gene predicted gene, 32229
Cpgi104 1 33719674 to 33720832 1158 CpG island CpG island 104
Tssr6150 1 33719863 to 33719901 38 + TSS region transcription start site region 6150
Rab23 1 33719888 to 33742564 22676 + protein coding gene RAB23, member RAS oncogene family
Tssr6151 1 33719903 to 33719945 42 + TSS region transcription start site region 6151
Tssr6152 1 33719980 to 33719992 12 + TSS region transcription start site region 6152
Tssr11194 1 33720079 to 33720097 18 - TSS region transcription start site region 11194
Tssr11195 1 33720257 to 33720270 13 - TSS region transcription start site region 11195
Tssr11196 1 33720354 to 33720363 9 - TSS region transcription start site region 11196
Tssr31 1 33738772 to 33738798 26 - TSS region transcription start site region 31
Tssr32 1 33738923 to 33738959 36 + TSS region transcription start site region 32
Cpgi105 1 33739391 to 33739564 173 CpG island CpG island 105
Bag2 1 33745484 to 33757750 12266 - protein coding gene BCL2-associated athanogene 2
Gm37905 1 33748007 to 33748347 340 + unclassified gene predicted gene, 37905
Cpgi106 1 33757137 to 33758143 1006 CpG island CpG island 106
Tssr11197 1 33757686 to 33757695 9 - TSS region transcription start site region 11197
Tssr11198 1 33757711 to 33757780 69 - TSS region transcription start site region 11198
Tssr11199 1 33757922 to 33757946 24 - TSS region transcription start site region 11199
Tssr11200 1 33757960 to 33757977 17 - TSS region transcription start site region 11200
Zfp451 1 33761545 to 33814595 53050 - protein coding gene zinc finger protein 451
D1Mit318 1 33787393 to 33787517 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 318
Tssr11201 1 33813242 to 33813290 48 - TSS region transcription start site region 11201
Tssr11202 1 33813317 to 33813321 4 - TSS region transcription start site region 11202
Tssr6153 1 33813376 to 33813404 28 + TSS region transcription start site region 6153
Tssr6154 1 33813407 to 33813422 15 + TSS region transcription start site region 6154
Tssr6155 1 33813661 to 33813673 12 + TSS region transcription start site region 6155
Cpgi107 1 33813931 to 33814827 896 CpG island CpG island 107
Tssr11203 1 33814395 to 33814406 11 - TSS region transcription start site region 11203
Tssr11204 1 33814407 to 33814468 61 - TSS region transcription start site region 11204
Tssr11205 1 33814474 to 33814488 14 - TSS region transcription start site region 11205
Tssr11206 1 33814516 to 33814573 57 - TSS region transcription start site region 11206
Tssr11207 1 33814591 to 33814600 9 - TSS region transcription start site region 11207
Gm15455 1 33836124 to 33838680 2556 - pseudogene predicted gene 15455
Bend6 1 33852052 to 33907816 55764 - protein coding gene BEN domain containing 6
Tssr11208 1 33864663 to 33864679 16 - TSS region transcription start site region 11208
Gm38471 1 33873086 to 33874756 1670 - lncRNA gene predicted gene, 38471
Cpgi108 1 33883515 to 33883726 211 CpG island CpG island 108
Tssr11209 1 33887595 to 33887598 3 - TSS region transcription start site region 11209
Gm37067 1 33889490 to 33891117 1627 - unclassified gene predicted gene, 37067
Tssr33 1 33899261 to 33899269 8 + TSS region transcription start site region 33
D1Dcr49 1 33904610 to 33904714 104 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 49
Cpgi109 1 33906896 to 33908773 1877 CpG island CpG island 109
Tssr11210 1 33907681 to 33907691 10 - TSS region transcription start site region 11210
Tssr11211 1 33907699 to 33907710 11 - TSS region transcription start site region 11211
Tssr11212 1 33907721 to 33907809 88 - TSS region transcription start site region 11212
Tssr11213 1 33907826 to 33907837 11 - TSS region transcription start site region 11213
Tssr11214 1 33907849 to 33907860 11 - TSS region transcription start site region 11214
Tssr6156 1 33907864 to 33907949 85 + TSS region transcription start site region 6156
Tssr6157 1 33908020 to 33908065 45 + TSS region transcription start site region 6157
Tssr6158 1 33908077 to 33908090 13 + TSS region transcription start site region 6158
Tssr6159 1 33908172 to 33908184 12 + TSS region transcription start site region 6159
Dst 1 33908225 to 34308661 400436 + protein coding gene dystonin
Tssr6160 1 33911578 to 33911584 6 + TSS region transcription start site region 6160
Gm37354 1 33922455 to 33924838 2383 + unclassified gene predicted gene, 37354
Tssr6161 1 33922468 to 33922476 8 + TSS region transcription start site region 6161
Cpgi110 1 33945135 to 33945302 167 CpG island CpG island 110
Gm28631 1 33963352 to 33963685 333 - pseudogene predicted gene 28631
Tssr6162 1 33974651 to 33974671 20 + TSS region transcription start site region 6162
Tssr6163 1 33974730 to 33974737 7 + TSS region transcription start site region 6163
Tssr6164 1 33974744 to 33974748 4 + TSS region transcription start site region 6164
Tssr6165 1 33975921 to 33975924 3 + TSS region transcription start site region 6165
Gm23792 1 33981410 to 33981502 92 - snRNA gene predicted gene, 23792
30.MHAa96c6.seq 1 33989199 to 33989345 146 DNA segment DNA segment, 30.MHAa96c6.seq
Tssr6166 1 33991010 to 33991018 8 + TSS region transcription start site region 6166
Tssr6167 1 34005872 to 34005908 36 + TSS region transcription start site region 6167
Cpgi111 1 34005913 to 34006301 388 CpG island CpG island 111
Tssr6168 1 34005918 to 34005943 25 + TSS region transcription start site region 6168
Cpgi112 1 34010918 to 34012179 1261 CpG island CpG island 112
Tssr6169 1 34011228 to 34011250 22 + TSS region transcription start site region 6169
Tssr6170 1 34011257 to 34011268 11 + TSS region transcription start site region 6170
Tssr6171 1 34011550 to 34011559 9 + TSS region transcription start site region 6171
Tssr6172 1 34011564 to 34011602 38 + TSS region transcription start site region 6172
Tssr6173 1 34022711 to 34022723 12 + TSS region transcription start site region 6173
Tssr6174 1 34022756 to 34022770 14 + TSS region transcription start site region 6174
Tssr6175 1 34022790 to 34022803 13 + TSS region transcription start site region 6175
Gm38157 1 34032100 to 34033797 1697 + unclassified gene predicted gene, 38157
Tssr6176 1 34053657 to 34053688 31 + TSS region transcription start site region 6176
Tssr6177 1 34065762 to 34065767 5 + TSS region transcription start site region 6177
Tssr6178 1 34068569 to 34068601 32 + TSS region transcription start site region 6178
Tssr11215 1 34073844 to 34073879 35 - TSS region transcription start site region 11215
Tssr6179 1 34077190 to 34077219 29 + TSS region transcription start site region 6179
Tssr6180 1 34077227 to 34077245 18 + TSS region transcription start site region 6180
Tssr6181 1 34077280 to 34077290 10 + TSS region transcription start site region 6181
Tssr6182 1 34077294 to 34077302 8 + TSS region transcription start site region 6182
Tssr6183 1 34089264 to 34089279 15 + TSS region transcription start site region 6183
Tssr6184 1 34089283 to 34089296 13 + TSS region transcription start site region 6184
Tssr6185 1 34097265 to 34097294 29 + TSS region transcription start site region 6185
Tssr6186 1 34099738 to 34099740 2 + TSS region transcription start site region 6186
D1Dcr22 1 34112282 to 34112378 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 22
Mir6896 1 34117359 to 34117431 72 + miRNA gene microRNA 6896
Tssr6187 1 34121174 to 34121187 13 + TSS region transcription start site region 6187
Tssr6188 1 34121250 to 34121288 38 + TSS region transcription start site region 6188
Tssr6189 1 34121337 to 34121348 11 + TSS region transcription start site region 6189
Tssr34 1 34121363 to 34121372 9 + TSS region transcription start site region 34
Tssr6190 1 34121403 to 34121425 22 + TSS region transcription start site region 6190
Tssr6191 1 34121441 to 34121458 17 + TSS region transcription start site region 6191
Tssr6192 1 34121469 to 34121484 15 + TSS region transcription start site region 6192
Tssr6193 1 34124619 to 34124630 11 + TSS region transcription start site region 6193
D1Dcr23 1 34141676 to 34141771 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 23
Tssr11216 1 34144575 to 34144578 3 - TSS region transcription start site region 11216
D1Dcr50 1 34156460 to 34156555 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 50
Tssr6194 1 34160148 to 34160161 13 + TSS region transcription start site region 6194
Tssr6195 1 34160254 to 34160271 17 + TSS region transcription start site region 6195
Gm26788 1 34166315 to 34177976 11661 - lncRNA gene predicted gene, 26788
Tssr6196 1 34171112 to 34171149 37 + TSS region transcription start site region 6196
Cpgi113 1 34177952 to 34178343 391 CpG island CpG island 113
Tssr6197 1 34184107 to 34184112 5 + TSS region transcription start site region 6197
Tssr6198 1 34186869 to 34186881 12 + TSS region transcription start site region 6198
Tssr6199 1 34187796 to 34187808 12 + TSS region transcription start site region 6199
Tssr6200 1 34187875 to 34187879 4 + TSS region transcription start site region 6200
Tssr6201 1 34197239 to 34197254 15 + TSS region transcription start site region 6201
Tssr6202 1 34212944 to 34212994 50 + TSS region transcription start site region 6202
Tssr6203 1 34215284 to 34215298 14 + TSS region transcription start site region 6203
Tssr6204 1 34215301 to 34215313 12 + TSS region transcription start site region 6204
Tssr6205 1 34215324 to 34215332 8 + TSS region transcription start site region 6205
Tssr6206 1 34227913 to 34227924 11 + TSS region transcription start site region 6206
Cpgi114 1 34236112 to 34236793 681 CpG island CpG island 114
Tssr6207 1 34236544 to 34236570 26 + TSS region transcription start site region 6207
Tssr6208 1 34236585 to 34236602 17 + TSS region transcription start site region 6208
D630036G22Rik 1 34236595 to 34238820 2225 unclassified gene RIKEN cDNA D630036G22 gene
Tssr6209 1 34236614 to 34236652 38 + TSS region transcription start site region 6209
Tssr6210 1 34236683 to 34236694 11 + TSS region transcription start site region 6210
Tssr6211 1 34238094 to 34238106 12 + TSS region transcription start site region 6211
A930005N03Rik 1 34269882 to 34271128 1246 - unclassified non-coding RNA gene RIKEN cDNA A930005N03 gene
Tssr6212 1 34307768 to 34307783 15 + TSS region transcription start site region 6212
Tssr6213 1 34307929 to 34307942 13 + TSS region transcription start site region 6213
Gm37958 1 34329433 to 34330307 874 - lincRNA gene predicted gene, 37958
Gm37385 1 34350775 to 34351161 386 + unclassified gene predicted gene, 37385
Gm5266 1 34367374 to 34369003 1629 + pseudogene predicted gene 5266
Gm3052 1 34415050 to 34417986 2936 - pseudogene predicted gene 3052
Gm37233 1 34427002 to 34433264 6262 - lincRNA gene predicted gene, 37233
Cpgi115 1 34432848 to 34433306 458 CpG island CpG island 115
Mir5103 1 34433121 to 34433199 78 - miRNA gene microRNA 5103
Tssr11217 1 34433249 to 34433298 49 - TSS region transcription start site region 11217
n-TEttc1 1 34434812 to 34434883 71 - tRNA gene nuclear encoded tRNA glutamic acid 1 (anticodon TTC)
Cpgi116 1 34434889 to 34435227 338 CpG island CpG island 116
Tssr6214 1 34435092 to 34435106 14 + TSS region transcription start site region 6214
Ccdc115 1 34436670 to 34439672 3002 - protein coding gene coiled-coil domain containing 115
Cpgi117 1 34439128 to 34440365 1237 CpG island CpG island 117
Tssr11218 1 34439337 to 34439379 42 - TSS region transcription start site region 11218
Gm28306 1 34439511 to 34444730 5219 - antisense lncRNA gene predicted gene 28306
Imp4 1 34439829 to 34445747 5918 + protein coding gene IMP4, U3 small nucleolar ribonucleoprotein
Tssr6215 1 34439855 to 34439910 55 + TSS region transcription start site region 6215
Tssr6216 1 34443868 to 34443886 18 + TSS region transcription start site region 6216
Tssr6217 1 34444857 to 34444904 47 + TSS region transcription start site region 6217
Tssr6218 1 34447031 to 34447041 10 + TSS region transcription start site region 6218
Gm32504 1 34459009 to 34459827 818 - lncRNA gene predicted gene, 32504
Cpgi118 1 34459384 to 34460268 884 CpG island CpG island 118
Tssr35 1 34459724 to 34459740 16 + TSS region transcription start site region 35
Ptpn18 1 34459746 to 34473784 14038 + protein coding gene protein tyrosine phosphatase, non-receptor type 18
Tssr6219 1 34459756 to 34459814 58 + TSS region transcription start site region 6219
Gm28417 1 34468834 to 34473148 4314 - unclassified non-coding RNA gene predicted gene 28417
Cpgi119 1 34472565 to 34473380 815 CpG island CpG island 119
Tssr6220 1 34472714 to 34472757 43 + TSS region transcription start site region 6220
Tssr6221 1 34472765 to 34472772 7 + TSS region transcription start site region 6221
Tssr6222 1 34472781 to 34472792 11 + TSS region transcription start site region 6222
Tssr11219 1 34473047 to 34473058 11 - TSS region transcription start site region 11219
Tssr11220 1 34473158 to 34473181 23 - TSS region transcription start site region 11220
Tssr6223 1 34473213 to 34473245 32 + TSS region transcription start site region 6223
Tssr6224 1 34473263 to 34473296 33 + TSS region transcription start site region 6224
Tssr6225 1 34473314 to 34473322 8 + TSS region transcription start site region 6225
Gm32566 1 34474787 to 34485981 11194 + lncRNA gene predicted gene, 32566
4930568A12Rik 1 34477167 to 34485933 8766 - lincRNA gene RIKEN cDNA 4930568A12 gene
Tssr36 1 34485312 to 34485329 17 + TSS region transcription start site region 36
Cpgi120 1 34485572 to 34486047 475 CpG island CpG island 120
Tssr11221 1 34485924 to 34485946 22 - TSS region transcription start site region 11221
Tssr11222 1 34485948 to 34485967 19 - TSS region transcription start site region 11222