Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:3287564-6427601

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Xkr4 1 3205901 to 3671498 465597 - protein coding gene X-linked Kx blood group related 4
Tssr10865 1 3319504 to 3319507 3 - TSS region transcription start site region 10865
Gm39585 1 3361552 to 3377812 16260 + lncRNA gene predicted gene, 39585
Gm37180 1 3365731 to 3368549 2818 - unclassified gene predicted gene, 37180
Gm37363 1 3375556 to 3377788 2232 - unclassified gene predicted gene, 37363
Tssr10866 1 3377786 to 3377789 3 - TSS region transcription start site region 10866
Gm37686 1 3464977 to 3467285 2308 - unclassified gene predicted gene, 37686
Gm1992 1 3466587 to 3513553 46966 + antisense lncRNA gene predicted gene 1992
Tssr10867 1 3489149 to 3489153 4 - TSS region transcription start site region 10867
Gm37329 1 3512451 to 3514507 2056 - unclassified gene predicted gene, 37329
Cpgi1 1 3531623 to 3531920 297 CpG island CpG island 1
Gm7341 1 3531795 to 3532720 925 + pseudogene predicted gene 7341
Gm38148 1 3592892 to 3595903 3011 - unclassified gene predicted gene, 38148
Gm19938 1 3647309 to 3658904 11595 - sense intronic lncRNA gene predicted gene, 19938
D1Mit475 1 3652137 to 3652249 112 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 475
Tssr10868 1 3654895 to 3654899 4 - TSS region transcription start site region 10868
Tssr10869 1 3667834 to 3667838 4 - TSS region transcription start site region 10869
Cpgi2 1 3670453 to 3672677 2224 CpG island CpG island 2
Tssr10870 1 3671671 to 3671733 62 - TSS region transcription start site region 10870
Tssr10871 1 3671770 to 3671808 38 - TSS region transcription start site region 10871
Tssr5795 1 3674608 to 3674612 4 + TSS region transcription start site region 5795
Gm10568 1 3680155 to 3681788 1633 + unclassified gene predicted gene 10568
Gm38385 1 3752010 to 3754360 2350 + unclassified gene predicted gene, 38385
Gm27396 1 3783876 to 3783933 57 - snRNA gene predicted gene, 27396
Tssr5796 1 3873210 to 3873235 25 + TSS region transcription start site region 5796
Gm37381 1 3905739 to 3986215 80476 - lincRNA gene predicted gene, 37381
Gm38717 1 4115673 to 4243365 127692 - protein coding gene predicted gene, 38717
D1Mit242.1 1 4195036 to 4195150 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 242.1
D1Mit242 1 4195172 to 4195255 83 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 242
Gm6101 1 4256234 to 4260519 4285 - pseudogene predicted gene 6101
Rp1 1 4290846 to 4409266 118420 - protein coding gene retinitis pigmentosa 1 (human)
Cpgi3 1 4352320 to 4352566 246 CpG island CpG island 3
Tssr10872 1 4360237 to 4360246 9 - TSS region transcription start site region 10872
Tssr10873 1 4360256 to 4360312 56 - TSS region transcription start site region 10873
Gm37483 1 4363346 to 4364829 1483 - unclassified gene predicted gene, 37483
Tssr10874 1 4409223 to 4409240 17 - TSS region transcription start site region 10874
Tssr10875 1 4409247 to 4409275 28 - TSS region transcription start site region 10875
Tssr10876 1 4409278 to 4409290 12 - TSS region transcription start site region 10876
Sox17 1 4490931 to 4497354 6423 - protein coding gene SRY (sex determining region Y)-box 17
Cpgi4 1 4491620 to 4493791 2171 CpG island CpG island 4
Tssr10877 1 4493598 to 4493614 16 - TSS region transcription start site region 10877
Tssr10878 1 4496372 to 4496389 17 - TSS region transcription start site region 10878
Tssr10879 1 4496400 to 4496420 20 - TSS region transcription start site region 10879
Tssr10880 1 4496424 to 4496446 22 - TSS region transcription start site region 10880
Tssr10881 1 4496449 to 4496476 27 - TSS region transcription start site region 10881
Tssr10882 1 4496513 to 4496531 18 - TSS region transcription start site region 10882
Gm37587 1 4496551 to 4499558 3007 + unclassified non-coding RNA gene predicted gene, 37587
Cpgi5 1 4496763 to 4497717 954 CpG island CpG island 5
Tssr10883 1 4497366 to 4497391 25 - TSS region transcription start site region 10883
Tssr10884 1 4497395 to 4497409 14 - TSS region transcription start site region 10884
Tssr5797 1 4522816 to 4522864 48 + TSS region transcription start site region 5797
Gm7357 1 4522905 to 4526737 3832 + pseudogene predicted gene 7357
Gm22307 1 4529017 to 4529123 106 + snRNA gene predicted gene, 22307
Gm38076 1 4534837 to 4535286 449 - pseudogene predicted gene, 38076
D1Mit427 1 4536568 to 4536681 113 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 427
Cpgi6 1 4571499 to 4572209 710 CpG island CpG island 6
Gm37323 1 4583129 to 4586252 3123 - lincRNA gene predicted gene, 37323
Gm39586 1 4595057 to 4602832 7775 + lncRNA gene predicted gene, 39586
Tssr10885 1 4602168 to 4602169 1 - TSS region transcription start site region 10885
Gm46082 1 4603255 to 4606521 3266 - lncRNA gene predicted gene, 46082
Gm29874 1 4608937 to 4617805 8868 + lncRNA gene predicted gene, 29874
Tssr10886 1 4608982 to 4609021 39 - TSS region transcription start site region 10886
Gm7369 1 4610471 to 4611406 935 + pseudogene predicted gene 7369
Cpgi7 1 4688129 to 4688477 348 CpG island CpG island 7
Gm6085 1 4688569 to 4689409 840 - pseudogene predicted gene 6085
Gm6119 1 4692219 to 4693424 1205 - pseudogene predicted gene 6119
Tssr5798 1 4722855 to 4722893 38 + TSS region transcription start site region 5798
Gm25493 1 4723277 to 4723379 102 - snRNA gene predicted gene, 25493
Gm2053 1 4735050 to 4735679 629 - pseudogene predicted gene 2053
Tssr5799 1 4771094 to 4771122 28 + TSS region transcription start site region 5799
Gm6123 1 4771131 to 4772199 1068 + pseudogene predicted gene 6123
Mrpl15 1 4773206 to 4785739 12533 - protein coding gene mitochondrial ribosomal protein L15
Gm37144 1 4778063 to 4779212 1149 - unclassified gene predicted gene, 37144
Cpgi8 1 4785380 to 4785997 617 CpG island CpG island 8
Tssr10887 1 4785671 to 4785744 73 - TSS region transcription start site region 10887
Tssr5800 1 4785772 to 4785802 30 + TSS region transcription start site region 5800
A930006A01Rik 1 4785777 to 4786629 852 unclassified gene RIKEN cDNA A930006A01 gene
Cpgi9 1 4807441 to 4808294 853 CpG island CpG island 9
Lypla1 1 4807560 to 4846739 39179 + protein coding gene lysophospholipase 1
Tssr5801 1 4807642 to 4807672 30 + TSS region transcription start site region 5801
Tssr10888 1 4807660 to 4807702 42 - TSS region transcription start site region 10888
Tssr10889 1 4807718 to 4807747 29 - TSS region transcription start site region 10889
Tssr5802 1 4807866 to 4807928 62 + TSS region transcription start site region 5802
Gm37988 1 4807892 to 4886770 78878 + protein coding gene predicted gene, 37988
Tssr5803 1 4808246 to 4808287 41 + TSS region transcription start site region 5803
Tssr5804 1 4828575 to 4828616 41 + TSS region transcription start site region 5804
D1Ertd164e 1 4830931 to 4831167 236 DNA segment DNA segment, Chr 1, ERATO Doi 164, expressed
Tssr5805 1 4845593 to 4845604 11 + TSS region transcription start site region 5805
Cpgi10 1 4857408 to 4858475 1067 CpG island CpG island 10
Tssr10890 1 4857564 to 4857601 37 - TSS region transcription start site region 10890
Tssr5806 1 4857687 to 4857701 14 + TSS region transcription start site region 5806
Tssr5807 1 4857720 to 4857731 11 + TSS region transcription start site region 5807
Tssr5808 1 4857760 to 4857796 36 + TSS region transcription start site region 5808
Tcea1 1 4857814 to 4897909 40095 + protein coding gene transcription elongation factor A (SII) 1
Tssr5809 1 4858016 to 4858048 32 + TSS region transcription start site region 5809
Tssr5810 1 4858284 to 4858308 24 + TSS region transcription start site region 5810
Gm6104 1 4880049 to 4880651 602 - pseudogene predicted gene 6104
Tssr10891 1 4880693 to 4880699 6 - TSS region transcription start site region 10891
Gm37277 1 4905751 to 4906861 1110 - unclassified gene predicted gene, 37277
Rgs20 1 4909576 to 5070285 160709 - protein coding gene regulator of G-protein signaling 20
Tssr10892 1 4910240 to 4910244 4 - TSS region transcription start site region 10892
Gm17100 1 4927028 to 4927299 271 - pseudogene predicted gene 17100
Gm37079 1 4938576 to 4940710 2134 - unclassified gene predicted gene, 37079
Gm16041 1 4970857 to 4976820 5963 + antisense lncRNA gene predicted gene 16041
Tssr10893 1 4972390 to 4972416 26 - TSS region transcription start site region 10893
Cpgi11 1 5018203 to 5021131 2928 CpG island CpG island 11
Tssr10894 1 5019342 to 5019397 55 - TSS region transcription start site region 10894
Tssr10895 1 5020299 to 5020336 37 - TSS region transcription start site region 10895
Cpgi12 1 5022819 to 5023058 239 CpG island CpG island 12
Cpgi13 1 5023502 to 5023833 331 CpG island CpG island 13
Gm17101 1 5063060 to 5064647 1587 + pseudogene predicted gene 17101
Tssr10896 1 5070281 to 5070288 7 - TSS region transcription start site region 10896
Tssr10897 1 5070293 to 5070304 11 - TSS region transcription start site region 10897
Tssr10898 1 5070305 to 5070314 9 - TSS region transcription start site region 10898
Tssr10899 1 5070336 to 5070338 2 - TSS region transcription start site region 10899
Cpgi14 1 5082921 to 5083542 621 CpG island CpG island 14
Atp6v1h 1 5082978 to 5163213 80235 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit H
Tssr5811 1 5083105 to 5083160 55 + TSS region transcription start site region 5811
Tssr5812 1 5083169 to 5083186 17 + TSS region transcription start site region 5812
Tssr5813 1 5083206 to 5083217 11 + TSS region transcription start site region 5813
Tssr1 1 5083521 to 5083530 9 + TSS region transcription start site region 1
Tssr5814 1 5083560 to 5083587 27 + TSS region transcription start site region 5814
Tssr10900 1 5084523 to 5084544 21 - TSS region transcription start site region 10900
Tssr5815 1 5094136 to 5094140 4 + TSS region transcription start site region 5815
Tssr5816 1 5098061 to 5098109 48 + TSS region transcription start site region 5816
Tssr5817 1 5105326 to 5105334 8 + TSS region transcription start site region 5817
Tssr5818 1 5115205 to 5115211 6 + TSS region transcription start site region 5818
Tssr5819 1 5139383 to 5139388 5 + TSS region transcription start site region 5819
B230334L07Rik 1 5156596 to 5158505 1909 unclassified gene RIKEN cDNA B230334L07 gene
Tssr10901 1 5170639 to 5170674 35 - TSS region transcription start site region 10901
Gm7182 1 5276110 to 5276798 688 - pseudogene predicted gene 7182
Gm37567 1 5307739 to 5310017 2278 + unclassified gene predicted gene, 37567
Gm19070 1 5319710 to 5320327 617 - pseudogene predicted gene, 19070
Gm38264 1 5403547 to 5405578 2031 + unclassified gene predicted gene, 38264
D1Mit474 1 5579697 to 5579843 146 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 474
Oprk1 1 5588466 to 5606131 17665 + protein coding gene opioid receptor, kappa 1
Gm36965 1 5617837 to 5618230 393 - pseudogene predicted gene, 36965
Tssr10902 1 5618200 to 5618211 11 - TSS region transcription start site region 10902
Gm22463 1 5644645 to 5644745 100 - miRNA gene predicted gene, 22463
Gm37429 1 5842874 to 5844672 1798 - unclassified gene predicted gene, 37429
Alpq4 1 5906465 to 5906465 0 QTL alcohol preference QTL 4
Npbwr1 1 5913707 to 5917398 3691 - protein coding gene neuropeptides B/W receptor 1
Cpgi15 1 5916286 to 5917516 1230 CpG island CpG island 15
Gm19214 1 6048972 to 6050045 1073 - pseudogene predicted gene, 19214
Gm46206 1 6164706 to 6167315 2609 - lncRNA gene predicted gene, 46206
4732440D04Rik 1 6209866 to 6215293 5427 - antisense lncRNA gene RIKEN cDNA 4732440D04 gene
Cpgi16 1 6214130 to 6215591 1461 CpG island CpG island 16
Tssr10903 1 6214436 to 6214447 11 - TSS region transcription start site region 10903
Tssr10904 1 6214515 to 6214534 19 - TSS region transcription start site region 10904
Tssr10905 1 6214539 to 6214572 33 - TSS region transcription start site region 10905
Tssr10906 1 6214574 to 6214605 31 - TSS region transcription start site region 10906
Tssr5820 1 6214627 to 6214683 56 + TSS region transcription start site region 5820
Rb1cc1 1 6214662 to 6276374 61712 + protein coding gene RB1-inducible coiled-coil 1
Tssr5821 1 6214684 to 6214722 38 + TSS region transcription start site region 5821
Tssr5822 1 6214787 to 6214801 14 + TSS region transcription start site region 5822
Tssr5823 1 6214806 to 6214817 11 + TSS region transcription start site region 5823
Tssr5824 1 6214828 to 6214838 10 + TSS region transcription start site region 5824
Tssr5825 1 6214857 to 6214866 9 + TSS region transcription start site region 5825
Tssr5826 1 6222703 to 6222707 4 + TSS region transcription start site region 5826
Tssr5827 1 6249311 to 6249329 18 + TSS region transcription start site region 5827
Tssr5828 1 6249702 to 6249714 12 + TSS region transcription start site region 5828
Tssr5829 1 6267083 to 6267088 5 + TSS region transcription start site region 5829
Tssr2 1 6324643 to 6324646 3 + TSS region transcription start site region 2
Cpgi17 1 6359030 to 6359537 507 CpG island CpG island 17
Alkal1 1 6359331 to 6394731 35400 + protein coding gene ALK and LTK ligand 1
Gm46083 1 6377512 to 6382119 4607 - lncRNA gene predicted gene, 46083
Tssr5830 1 6380272 to 6380282 10 + TSS region transcription start site region 5830
Gm2147 1 6380394 to 6381032 638 + pseudogene predicted gene 2147
Tssr10907 1 6382543 to 6382545 2 - TSS region transcription start site region 10907
Gm7417 1 6382634 to 6383106 472 - pseudogene predicted gene 7417
Cpgi18 1 6382766 to 6383291 525 CpG island CpG island 18
Tssr10908 1 6383047 to 6383058 11 - TSS region transcription start site region 10908