Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:31022714-33808568

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ebas2 1 3197400 to 32511500 29314100 QTL epidermolysis bullosa acquisita severity 2
Gm29669 1 31019188 to 31096454 77266 - lncRNA gene predicted gene 29669
D1Ertd702e 1 31023264 to 31023479 215 DNA segment DNA segment, Chr 1, ERATO Doi 702, expressed
Gm28644 1 31041919 to 31043675 1756 + lincRNA gene predicted gene 28644
Tssr6141 1 31095098 to 31095110 12 + TSS region transcription start site region 6141
D1Dcr21 1 31120819 to 31120914 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 21
Gm27362 1 31122725 to 31122862 137 - rRNA gene predicted gene, 27362
Gm29128 1 31136026 to 31150105 14079 + antisense lncRNA gene predicted gene 29128
4931428L18Rik 1 31141078 to 31222656 81578 - protein coding gene RIKEN cDNA 4931428L18 gene
Tssr29 1 31142436 to 31142459 23 + TSS region transcription start site region 29
Tssr11182 1 31143784 to 31143789 5 - TSS region transcription start site region 11182
Tssr30 1 31149892 to 31149896 4 - TSS region transcription start site region 30
Gm7893 1 31164549 to 31164773 224 + pseudogene predicted gene 7893
Tssr6142 1 31176404 to 31176413 9 + TSS region transcription start site region 6142
Lgsn 1 31176435 to 31204725 28290 + protein coding gene lengsin, lens protein with glutamine synthetase domain
D1Mit225 1 31206039 to 31206151 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 225
Tssr11183 1 31222604 to 31222620 16 - TSS region transcription start site region 11183
Tssr11184 1 31222627 to 31222643 16 - TSS region transcription start site region 11184
Tssr11185 1 31222644 to 31222677 33 - TSS region transcription start site region 11185
Tssr6143 1 31222782 to 31222792 10 + TSS region transcription start site region 6143
Tssr6144 1 31222808 to 31222821 13 + TSS region transcription start site region 6144
Pih1d3 1 31222839 to 31224287 1448 + protein coding gene PIH1 domain containing 3
Tssr6145 1 31253248 to 31253251 3 + TSS region transcription start site region 6145
Gm26145 1 31259593 to 31259719 126 - snoRNA gene predicted gene, 26145
Gm4850 1 31267326 to 31267884 558 + pseudogene predicted pseudogene 4850
Gm28645 1 31274892 to 31275455 563 + pseudogene predicted gene 28645
Gm6489 1 31286945 to 31287640 695 + pseudogene predicted gene 6489
Gm10307 1 31559606 to 31560831 1225 + pseudogene predicted gene 10307
Gm19680 1 31615149 to 31616661 1512 + pseudogene predicted gene, 19680
Gm23032 1 31656632 to 31656738 106 - snRNA gene predicted gene, 23032
Gm7910 1 31736307 to 31737089 782 + pseudogene predicted gene 7910
D1Mit20 1 31918790 to 31918896 106 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 20
Cpgi101 1 32172361 to 32173190 829 CpG island CpG island 101
Tssr6146 1 32172711 to 32172792 81 + TSS region transcription start site region 6146
Khdrbs2 1 32172714 to 32658568 485854 + protein coding gene KH domain containing, RNA binding, signal transduction associated 2
Gm25814 1 32213133 to 32213239 106 - snRNA gene predicted gene, 25814
Gm46077 1 32250668 to 32272788 22120 + pseudogene predicted gene, 46077
D1Mit319 1 32458783 to 32459069 286 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 319
Gm37999 1 32473757 to 32475565 1808 + unclassified gene predicted gene, 37999
Gm37110 1 32485315 to 32486942 1627 + unclassified gene predicted gene, 37110
Gm37911 1 32496444 to 32497988 1544 + unclassified gene predicted gene, 37911
Gm9839 1 32519563 to 32520999 1436 - protein coding gene predicted gene 9839
Gm37792 1 32539028 to 32542440 3412 + unclassified gene predicted gene, 37792
Gm5415 1 32543686 to 32547294 3608 - protein coding gene predicted gene 5415
Gm24732 1 32568359 to 32568421 62 - snRNA gene predicted gene, 24732
D1Mit70 1 32676444 to 32676624 180 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 70
13.MMHAP88FRE7.seq 1 32699471 to 32699633 162 DNA segment DNA segment, 13.MMHAP88FRE7.seq
Gm37426 1 32710179 to 32712648 2469 + unclassified gene predicted gene, 37426
Gm23024 1 32726639 to 32726930 291 + unclassified non-coding RNA gene predicted gene, 23024
Gm46235 1 32738535 to 32747184 8649 + lncRNA gene predicted gene, 46235
Gm37151 1 32967484 to 32972490 5006 - unclassified gene predicted gene, 37151
Gm28624 1 33028160 to 33030290 2130 - pseudogene predicted gene 28624
Gm37724 1 33065130 to 33066350 1220 + lincRNA gene predicted gene, 37724
Gm7114 1 33100906 to 33102693 1787 + pseudogene predicted gene 7114
Gm4785 1 33108910 to 33109657 747 - pseudogene predicted gene 4785
Gm39616 1 33133243 to 33176251 43008 - lncRNA gene predicted gene, 39616
Gm24901 1 33191993 to 33192102 109 + snRNA gene predicted gene, 24901
Gm37591 1 33212774 to 33215475 2701 - lincRNA gene predicted gene, 37591
D1Mit411 1 33220299 to 33220410 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 411
Gm2987 1 33236945 to 33237589 644 + pseudogene predicted gene 2987
Gm39617 1 33290823 to 33354602 63779 - lncRNA gene predicted gene, 39617
Gm25792 1 33293676 to 33293775 99 + snRNA gene predicted gene, 25792
Gm18799 1 33315680 to 33316471 791 - pseudogene predicted gene, 18799
Gm7933 1 33371966 to 33373582 1616 + pseudogene predicted gene 7933
Gm23453 1 33422733 to 33422838 105 + snRNA gene predicted gene, 23453
Prim2 1 33453810 to 33669795 215985 - protein coding gene DNA primase, p58 subunit
Tssr11186 1 33480513 to 33480530 17 - TSS region transcription start site region 11186
Gm29228 1 33482101 to 33482518 417 + pseudogene predicted gene 29228
Gm39618 1 33522521 to 33530620 8099 + lncRNA gene predicted gene, 39618
Tssr6147 1 33578986 to 33579003 17 + TSS region transcription start site region 6147
D1Mit277 1 33591425 to 33591574 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 277
Tssr11187 1 33605825 to 33605833 8 - TSS region transcription start site region 11187
Gm37618 1 33613758 to 33616832 3074 - unclassified gene predicted gene, 37618
Tssr11188 1 33621416 to 33621423 7 - TSS region transcription start site region 11188
Cpgi102 1 33637957 to 33638256 299 CpG island CpG island 102
Tssr11189 1 33638004 to 33638020 16 - TSS region transcription start site region 11189
Tssr11190 1 33649153 to 33649173 20 - TSS region transcription start site region 11190
Gm17813 1 33657781 to 33658108 327 + pseudogene predicted gene, 17813
Cpgi103 1 33669484 to 33670637 1153 CpG island CpG island 103
Tssr11191 1 33669728 to 33669739 11 - TSS region transcription start site region 11191
Tssr11192 1 33669745 to 33669792 47 - TSS region transcription start site region 11192
Tssr11193 1 33669795 to 33669806 11 - TSS region transcription start site region 11193
Tssr6148 1 33669816 to 33669856 40 + TSS region transcription start site region 6148
1700001G17Rik 1 33669824 to 33670712 888 + lncRNA gene RIKEN cDNA 1700001G17 gene
Tssr6149 1 33669861 to 33669880 19 + TSS region transcription start site region 6149
Gm38173 1 33671915 to 33674228 2313 - unclassified gene predicted gene, 38173
Gm32229 1 33714183 to 33719895 5712 - lncRNA gene predicted gene, 32229
Cpgi104 1 33719674 to 33720832 1158 CpG island CpG island 104
Tssr6150 1 33719863 to 33719901 38 + TSS region transcription start site region 6150
Rab23 1 33719888 to 33742564 22676 + protein coding gene RAB23, member RAS oncogene family
Tssr6151 1 33719903 to 33719945 42 + TSS region transcription start site region 6151
Tssr6152 1 33719980 to 33719992 12 + TSS region transcription start site region 6152
Tssr11194 1 33720079 to 33720097 18 - TSS region transcription start site region 11194
Tssr11195 1 33720257 to 33720270 13 - TSS region transcription start site region 11195
Tssr11196 1 33720354 to 33720363 9 - TSS region transcription start site region 11196
Tssr31 1 33738772 to 33738798 26 - TSS region transcription start site region 31
Tssr32 1 33738923 to 33738959 36 + TSS region transcription start site region 32
Cpgi105 1 33739391 to 33739564 173 CpG island CpG island 105
Bag2 1 33745484 to 33757750 12266 - protein coding gene BCL2-associated athanogene 2
Gm37905 1 33748007 to 33748347 340 + unclassified gene predicted gene, 37905
Cpgi106 1 33757137 to 33758143 1006 CpG island CpG island 106
Tssr11197 1 33757686 to 33757695 9 - TSS region transcription start site region 11197
Tssr11198 1 33757711 to 33757780 69 - TSS region transcription start site region 11198
Tssr11199 1 33757922 to 33757946 24 - TSS region transcription start site region 11199
Tssr11200 1 33757960 to 33757977 17 - TSS region transcription start site region 11200
Zfp451 1 33761545 to 33814595 53050 - protein coding gene zinc finger protein 451
D1Mit318 1 33787393 to 33787517 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 318