Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:30702339-30973921

35 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm39615	1	30482932 to 30755682	272750	-	lncRNA gene	predicted gene, 39615
Gm9898	1	30718560 to 30719962	1402	-	lincRNA gene	predicted gene 9898
Tssr6133	1	30718725 to 30718735	10	+	TSS region	transcription start site region 6133
Tssr6134	1	30722086 to 30722087	1	+	TSS region	transcription start site region 6134
Gm6473	1	30769687 to 30771815	2128	+	pseudogene	predicted gene 6473
Cpgi98	1	30769694 to 30769869	175		CpG island	CpG island 98
Gm2914	1	30794548 to 30794875	327	-	pseudogene	predicted gene 2914
Phf3	1	30802339 to 30873921	71582	-	protein coding gene	PHD finger protein 3
Tssr11166	1	30804208 to 30804251	43	-	TSS region	transcription start site region 11166
Acigg4	1	30830773 to 30830773	0		QTL	anti COL7 IgG2a/c antibody 4
Gm37522	1	30833548 to 30836431	2883	-	unclassified gene	predicted gene, 37522
D1Ertd83e	1	30841595 to 30841826	231		DNA segment	DNA segment, Chr 1, ERATO Doi 83, expressed
Gm37906	1	30865504 to 30868538	3034	-	unclassified gene	predicted gene, 37906
Gm7256	1	30872651 to 30873949	1298		unclassified gene	predicted gene 7256
Cpgi99	1	30872796 to 30874272	1476		CpG island	CpG island 99
Tssr11167	1	30873584 to 30873657	73	-	TSS region	transcription start site region 11167
Tssr11168	1	30873837 to 30873925	88	-	TSS region	transcription start site region 11168
Tssr6135	1	30873999 to 30874013	14	+	TSS region	transcription start site region 6135
Tssr6136	1	30875008 to 30875040	32	+	TSS region	transcription start site region 6136
Tssr11169	1	30875911 to 30875923	12	-	TSS region	transcription start site region 11169
Ptp4a1	1	30940302 to 30949309	9007	-	protein coding gene	protein tyrosine phosphatase 4a1
Tssr11170	1	30948675 to 30948678	3	-	TSS region	transcription start site region 11170
Cpgi100	1	30948788 to 30950235	1447		CpG island	CpG island 100
Tssr11171	1	30949090 to 30949101	11	-	TSS region	transcription start site region 11171
Tssr11172	1	30949297 to 30949337	40	-	TSS region	transcription start site region 11172
Tssr11173	1	30949756 to 30949757	1	-	TSS region	transcription start site region 11173
Tssr6137	1	30949864 to 30949882	18	+	TSS region	transcription start site region 6137
Tssr11174	1	30949877 to 30949880	3	-	TSS region	transcription start site region 11174
Tssr6138	1	30949889 to 30949909	20	+	TSS region	transcription start site region 6138
Tssr11175	1	30949904 to 30949926	22	-	TSS region	transcription start site region 11175
Tssr11176	1	30950017 to 30950038	21	-	TSS region	transcription start site region 11176
Tssr11177	1	30950087 to 30950133	46	-	TSS region	transcription start site region 11177
Tssr11178	1	30950141 to 30950154	13	-	TSS region	transcription start site region 11178
Tssr6139	1	30950255 to 30950264	9	+	TSS region	transcription start site region 6139
Tssr6140	1	30952589 to 30952594	5	+	TSS region	transcription start site region 6140