Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:30589687-30951815

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39615 1 30482932 to 30755682 272750 - lncRNA gene predicted gene, 39615
Gm46086 1 30642044 to 30642316 272 - pseudogene predicted gene, 46086
Tssr11165 1 30642329 to 30642341 12 - TSS region transcription start site region 11165
Gm9898 1 30718560 to 30719962 1402 - lincRNA gene predicted gene 9898
Tssr6133 1 30718725 to 30718735 10 + TSS region transcription start site region 6133
Tssr6134 1 30722086 to 30722087 1 + TSS region transcription start site region 6134
Gm6473 1 30769687 to 30771815 2128 + pseudogene predicted gene 6473
Cpgi98 1 30769694 to 30769869 175 CpG island CpG island 98
Gm2914 1 30794548 to 30794875 327 - pseudogene predicted gene 2914
Phf3 1 30802339 to 30873921 71582 - protein coding gene PHD finger protein 3
Tssr11166 1 30804208 to 30804251 43 - TSS region transcription start site region 11166
Acigg4 1 30830773 to 30830773 0 QTL anti COL7 IgG2a/c antibody 4
Gm37522 1 30833548 to 30836431 2883 - unclassified gene predicted gene, 37522
D1Ertd83e 1 30841595 to 30841826 231 DNA segment DNA segment, Chr 1, ERATO Doi 83, expressed
Gm37906 1 30865504 to 30868538 3034 - unclassified gene predicted gene, 37906
Gm7256 1 30872651 to 30873949 1298 unclassified gene predicted gene 7256
Cpgi99 1 30872796 to 30874272 1476 CpG island CpG island 99
Tssr11167 1 30873584 to 30873657 73 - TSS region transcription start site region 11167
Tssr11168 1 30873837 to 30873925 88 - TSS region transcription start site region 11168
Tssr6135 1 30873999 to 30874013 14 + TSS region transcription start site region 6135
Tssr6136 1 30875008 to 30875040 32 + TSS region transcription start site region 6136
Tssr11169 1 30875911 to 30875923 12 - TSS region transcription start site region 11169
Ptp4a1 1 30940302 to 30949309 9007 - protein coding gene protein tyrosine phosphatase 4a1
Tssr11170 1 30948675 to 30948678 3 - TSS region transcription start site region 11170
Cpgi100 1 30948788 to 30950235 1447 CpG island CpG island 100
Tssr11171 1 30949090 to 30949101 11 - TSS region transcription start site region 11171
Tssr11172 1 30949297 to 30949337 40 - TSS region transcription start site region 11172
Tssr11173 1 30949756 to 30949757 1 - TSS region transcription start site region 11173
Tssr6137 1 30949864 to 30949882 18 + TSS region transcription start site region 6137
Tssr11174 1 30949877 to 30949880 3 - TSS region transcription start site region 11174
Tssr6138 1 30949889 to 30949909 20 + TSS region transcription start site region 6138
Tssr11175 1 30949904 to 30949926 22 - TSS region transcription start site region 11175
Tssr11176 1 30950017 to 30950038 21 - TSS region transcription start site region 11176
Tssr11177 1 30950087 to 30950133 46 - TSS region transcription start site region 11177
Tssr11178 1 30950141 to 30950154 13 - TSS region transcription start site region 11178
Tssr6139 1 30950255 to 30950264 9 + TSS region transcription start site region 6139