Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:30446435-31934725

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39615 1 30482932 to 30755682 272750 - lncRNA gene predicted gene, 39615
Gm31581 1 30502305 to 30516611 14306 + lncRNA gene predicted gene, 31581
Gm46086 1 30642044 to 30642316 272 - pseudogene predicted gene, 46086
Tssr11165 1 30642329 to 30642341 12 - TSS region transcription start site region 11165
Gm9898 1 30718560 to 30719962 1402 - lincRNA gene predicted gene 9898
Tssr6133 1 30718725 to 30718735 10 + TSS region transcription start site region 6133
Tssr6134 1 30722086 to 30722087 1 + TSS region transcription start site region 6134
Gm6473 1 30769687 to 30771815 2128 + pseudogene predicted gene 6473
Cpgi98 1 30769694 to 30769869 175 CpG island CpG island 98
Gm2914 1 30794548 to 30794875 327 - pseudogene predicted gene 2914
Phf3 1 30802339 to 30873921 71582 - protein coding gene PHD finger protein 3
Tssr11166 1 30804208 to 30804251 43 - TSS region transcription start site region 11166
Acigg4 1 30830773 to 30830773 0 QTL anti COL7 IgG2a/c antibody 4
Gm37522 1 30833548 to 30836431 2883 - unclassified gene predicted gene, 37522
D1Ertd83e 1 30841595 to 30841826 231 DNA segment DNA segment, Chr 1, ERATO Doi 83, expressed
Gm37906 1 30865504 to 30868538 3034 - unclassified gene predicted gene, 37906
Gm7256 1 30872651 to 30873949 1298 unclassified gene predicted gene 7256
Cpgi99 1 30872796 to 30874272 1476 CpG island CpG island 99
Tssr11167 1 30873584 to 30873657 73 - TSS region transcription start site region 11167
Tssr11168 1 30873837 to 30873925 88 - TSS region transcription start site region 11168
Tssr6135 1 30873999 to 30874013 14 + TSS region transcription start site region 6135
Tssr6136 1 30875008 to 30875040 32 + TSS region transcription start site region 6136
Tssr11169 1 30875911 to 30875923 12 - TSS region transcription start site region 11169
Ptp4a1 1 30940302 to 30949309 9007 - protein coding gene protein tyrosine phosphatase 4a1
Tssr11170 1 30948675 to 30948678 3 - TSS region transcription start site region 11170
Cpgi100 1 30948788 to 30950235 1447 CpG island CpG island 100
Tssr11171 1 30949090 to 30949101 11 - TSS region transcription start site region 11171
Tssr11172 1 30949297 to 30949337 40 - TSS region transcription start site region 11172
Tssr11173 1 30949756 to 30949757 1 - TSS region transcription start site region 11173
Tssr6137 1 30949864 to 30949882 18 + TSS region transcription start site region 6137
Tssr11174 1 30949877 to 30949880 3 - TSS region transcription start site region 11174
Tssr6138 1 30949889 to 30949909 20 + TSS region transcription start site region 6138
Tssr11175 1 30949904 to 30949926 22 - TSS region transcription start site region 11175
Tssr11176 1 30950017 to 30950038 21 - TSS region transcription start site region 11176
Tssr11177 1 30950087 to 30950133 46 - TSS region transcription start site region 11177
Tssr11178 1 30950141 to 30950154 13 - TSS region transcription start site region 11178
Tssr6139 1 30950255 to 30950264 9 + TSS region transcription start site region 6139
Tssr6140 1 30952589 to 30952594 5 + TSS region transcription start site region 6140
Gm5698 1 30977246 to 30977968 722 - pseudogene predicted gene 5698
Gm9458 1 30986225 to 30986953 728 - pseudogene predicted gene 9458
Gm5699 1 30998186 to 30998908 722 - pseudogene predicted gene 5699
Tssr11179 1 31016828 to 31016836 8 - TSS region transcription start site region 11179
Tssr11180 1 31016883 to 31016888 5 - TSS region transcription start site region 11180
Tssr11181 1 31017595 to 31017601 6 - TSS region transcription start site region 11181
Gm29669 1 31019188 to 31096454 77266 - lncRNA gene predicted gene 29669
Tssr28 1 31020056 to 31020057 1 + TSS region transcription start site region 28
D1Ertd702e 1 31023264 to 31023479 215 DNA segment DNA segment, Chr 1, ERATO Doi 702, expressed
Gm28644 1 31041919 to 31043675 1756 + lincRNA gene predicted gene 28644
Tssr6141 1 31095098 to 31095110 12 + TSS region transcription start site region 6141
D1Dcr21 1 31120819 to 31120914 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 21
Gm27362 1 31122725 to 31122862 137 - rRNA gene predicted gene, 27362
Gm29128 1 31136026 to 31150105 14079 + antisense lncRNA gene predicted gene 29128
4931428L18Rik 1 31141078 to 31222656 81578 - protein coding gene RIKEN cDNA 4931428L18 gene
Tssr29 1 31142436 to 31142459 23 + TSS region transcription start site region 29
Tssr11182 1 31143784 to 31143789 5 - TSS region transcription start site region 11182
Tssr30 1 31149892 to 31149896 4 - TSS region transcription start site region 30
Gm7893 1 31164549 to 31164773 224 + pseudogene predicted gene 7893
Tssr6142 1 31176404 to 31176413 9 + TSS region transcription start site region 6142
Lgsn 1 31176435 to 31204725 28290 + protein coding gene lengsin, lens protein with glutamine synthetase domain
D1Mit225 1 31206039 to 31206151 112 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 225
Tssr11183 1 31222604 to 31222620 16 - TSS region transcription start site region 11183
Tssr11184 1 31222627 to 31222643 16 - TSS region transcription start site region 11184
Tssr11185 1 31222644 to 31222677 33 - TSS region transcription start site region 11185
Tssr6143 1 31222782 to 31222792 10 + TSS region transcription start site region 6143
Tssr6144 1 31222808 to 31222821 13 + TSS region transcription start site region 6144
Pih1d3 1 31222839 to 31224287 1448 + protein coding gene PIH1 domain containing 3
Tssr6145 1 31253248 to 31253251 3 + TSS region transcription start site region 6145
Gm26145 1 31259593 to 31259719 126 - snoRNA gene predicted gene, 26145
Gm4850 1 31267326 to 31267884 558 + pseudogene predicted pseudogene 4850
Gm28645 1 31274892 to 31275455 563 + pseudogene predicted gene 28645
Gm6489 1 31286945 to 31287640 695 + pseudogene predicted gene 6489
Gm10307 1 31559606 to 31560831 1225 + pseudogene predicted gene 10307
Gm19680 1 31615149 to 31616661 1512 + pseudogene predicted gene, 19680
Gm23032 1 31656632 to 31656738 106 - snRNA gene predicted gene, 23032
Gm7910 1 31736307 to 31737089 782 + pseudogene predicted gene 7910
D1Mit20 1 31918790 to 31918896 106 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 20