Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:27986488-30856612

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm19028 1 27989910 to 27991781 1871 + pseudogene predicted gene, 19028
6330565B04Rik 1 28569917 to 28571430 1513 unclassified non-coding RNA gene RIKEN cDNA 6330565B04 gene
Gm38089 1 28569918 to 28571431 1513 + unclassified gene predicted gene, 38089
Gm7846 1 28580499 to 28580772 273 - pseudogene predicted gene 7846
Gm597 1 28776122 to 28780252 4130 - protein coding gene predicted gene 597
Tssr11161 1 28780250 to 28780252 2 - TSS region transcription start site region 11161
Gm45942 1 28796145 to 28895588 99443 - lncRNA gene predicted gene, 45942
Gm5697 1 28801035 to 28802802 1767 - pseudogene predicted gene 5697
Tssr11162 1 28895557 to 28895568 11 - TSS region transcription start site region 11162
Tssr11163 1 28895580 to 28895607 27 - TSS region transcription start site region 11163
D1Dcr48 1 28895718 to 28895813 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 48
Gm6462 1 28938036 to 28938339 303 + pseudogene predicted gene 6462
Gm18033 1 29219700 to 29220249 549 + pseudogene predicted gene, 18033
Gm25586 1 29280964 to 29281075 111 - unclassified non-coding RNA gene predicted gene, 25586
Gm22679 1 29301480 to 29301579 99 + miRNA gene predicted gene, 22679
Gm23785 1 29361275 to 29361370 95 - miRNA gene predicted gene, 23785
Mir6342 1 29421488 to 29421612 124 + miRNA gene microRNA 6342
Gm5525 1 29484604 to 29485915 1311 - pseudogene predicted gene 5525
Tssr11164 1 29485934 to 29485939 5 - TSS region transcription start site region 11164
Cpgi97 1 29737103 to 29737335 232 CpG island CpG island 97
Tssr6129 1 29841834 to 29841839 5 + TSS region transcription start site region 6129
Gm7858 1 29930094 to 29930715 621 + pseudogene predicted gene 7858
Tssr6130 1 29969217 to 29969223 6 + TSS region transcription start site region 6130
Tssr6131 1 29979023 to 29979028 5 + TSS region transcription start site region 6131
Gm23771 1 29985934 to 29986043 109 + miRNA gene predicted gene, 23771
Tssr27 1 30052616 to 30052617 1 + TSS region transcription start site region 27
Gm31465 1 30121013 to 30139879 18866 - lncRNA gene predicted gene, 31465
Gm31525 1 30171705 to 30262611 90906 - lncRNA gene predicted gene, 31525
D1Mit526 1 30218503 to 30218602 99 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 526
Tssr6132 1 30284711 to 30284715 4 + TSS region transcription start site region 6132
Gm27430 1 30333291 to 30333397 106 - miRNA gene predicted gene, 27430
Gm39615 1 30482932 to 30755682 272750 - lncRNA gene predicted gene, 39615
Gm31581 1 30502305 to 30516611 14306 + lncRNA gene predicted gene, 31581
Gm46086 1 30642044 to 30642316 272 - pseudogene predicted gene, 46086
Tssr11165 1 30642329 to 30642341 12 - TSS region transcription start site region 11165
Gm9898 1 30718560 to 30719962 1402 - lincRNA gene predicted gene 9898
Tssr6133 1 30718725 to 30718735 10 + TSS region transcription start site region 6133
Tssr6134 1 30722086 to 30722087 1 + TSS region transcription start site region 6134
Gm6473 1 30769687 to 30771815 2128 + pseudogene predicted gene 6473
Cpgi98 1 30769694 to 30769869 175 CpG island CpG island 98
Gm2914 1 30794548 to 30794875 327 - pseudogene predicted gene 2914
Phf3 1 30802339 to 30873921 71582 - protein coding gene PHD finger protein 3
Tssr11166 1 30804208 to 30804251 43 - TSS region transcription start site region 11166
Acigg4 1 30830773 to 30830773 0 QTL anti COL7 IgG2a/c antibody 4
Gm37522 1 30833548 to 30836431 2883 - unclassified gene predicted gene, 37522
D1Ertd83e 1 30841595 to 30841826 231 DNA segment DNA segment, Chr 1, ERATO Doi 83, expressed