Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:25816814-27552460

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fecq3 1 12846696 to 26478604 13631908 QTL fecundity QTL 3
Adgrb3 1 25067476 to 25829707 762231 - protein coding gene adhesion G protein-coupled receptor B3
2900002M20Rik 1 25824390 to 25824719 329 - unclassified gene RIKEN cDNA 2900002M20 gene
Tssr11154 1 25829647 to 25829651 4 - TSS region transcription start site region 11154
Cpgi96 1 25829679 to 25830913 1234 CpG island CpG island 96
Tssr11155 1 25829718 to 25829742 24 - TSS region transcription start site region 11155
Tssr11156 1 25829779 to 25829812 33 - TSS region transcription start site region 11156
Tssr11157 1 25830026 to 25830041 15 - TSS region transcription start site region 11157
Tssr11158 1 25830057 to 25830077 20 - TSS region transcription start site region 11158
Tssr24 1 25830084 to 25830089 5 - TSS region transcription start site region 24
Tssr11159 1 25830090 to 25830189 99 - TSS region transcription start site region 11159
Gm9884 1 25830657 to 25831878 1221 + lncRNA gene predicted gene 9884
Gm39614 1 25879168 to 25892305 13137 + lncRNA gene predicted gene, 39614
Gm31076 1 25896970 to 25903608 6638 - lncRNA gene predicted gene, 31076
Gm19071 1 25993020 to 25994166 1146 - pseudogene predicted gene, 19071
Gm18443 1 25996604 to 25997159 555 - pseudogene predicted gene, 18443
Tssr6124 1 26156267 to 26156272 5 + TSS region transcription start site region 6124
Gm19123 1 26466236 to 26466886 650 + pseudogene predicted gene, 19123
D1Mit373 1 26478481 to 26478604 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 373
slck 1 26478481 to 66946425 40467944 heritable phenotypic marker slick hair
Gm24064 1 26566833 to 26566938 105 + snoRNA gene predicted gene, 24064
Tssr6125 1 26616984 to 26616993 9 + TSS region transcription start site region 6125
Tssr25 1 26617003 to 26617008 5 + TSS region transcription start site region 25
Tssr6126 1 26617024 to 26617031 7 + TSS region transcription start site region 6126
Gm31136 1 26619658 to 26775020 155362 + lncRNA gene predicted gene, 31136
D1Nds4 1 26634361 to 26634520 159 DNA segment DNA segment, Chr 1, Nuffield Department of Surgery 4
Cplaq4 1 26634361 to 26634520 159 QTL circadian period of locomotor activity 4
4931408C20Rik 1 26681814 to 26687460 5646 - protein coding gene RIKEN cDNA 4931408C20 gene
Tssr11160 1 26687458 to 26687462 4 - TSS region transcription start site region 11160
n-R5s209 1 26959103 to 26959221 118 - rRNA gene nuclear encoded rRNA 5S 209
D1Mit410 1 27024995 to 27025110 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 410
Gm19641 1 27336352 to 27336768 416 - pseudogene predicted gene, 19641