Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:24280461-25541659

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108
D1Mit520 1 24413293 to 24413428 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-520
Cpgi88 1 24453419 to 24453801 382 CpG island CpG island 88
Gm26418 1 24548841 to 24548977 136 - snoRNA gene predicted gene, 26418
Cpgi89 1 24586289 to 24587566 1277 CpG island CpG island 89
Gm2795 1 24586502 to 24587738 1236 unclassified gene predicted gene 2795
Tssr11135 1 24587413 to 24587425 12 - TSS region transcription start site region 11135
Tssr11136 1 24587433 to 24587448 15 - TSS region transcription start site region 11136
Tubb4b-ps2 1 24594087 to 24595423 1336 - pseudogene tubulin, beta 4B class IVB, pseudogene 2
Cpgi90 1 24595197 to 24595534 337 CpG island CpG island 90
Tssr11137 1 24595487 to 24595488 1 - TSS region transcription start site region 11137
Gm28439 1 24611535 to 24612410 875 - pseudogene predicted gene 28439
Cpgi91 1 24611541 to 24611993 452 CpG island CpG island 91
Tssr6109 1 24612002 to 24612039 37 + TSS region transcription start site region 6109
Cpgi92 1 24612251 to 24615351 3100 CpG island CpG island 92
Gm10222 1 24612407 to 24612700 293 - pseudogene predicted gene 10222
Tssr22 1 24612683 to 24612694 11 + TSS region transcription start site region 22
Gm28438 1 24612775 to 24613119 344 - pseudogene predicted gene 28438
Tssr11138 1 24613116 to 24613119 3 - TSS region transcription start site region 11138
Tssr23 1 24613175 to 24613194 19 + TSS region transcription start site region 23
Gm28437 1 24613189 to 24613971 782 - pseudogene predicted gene 28437
Gm10925 1 24613974 to 24614651 677 - pseudogene predicted gene 10925
Gm28661 1 24614885 to 24615565 680 - pseudogene predicted gene 28661
Gm29216 1 24615706 to 24616197 491 - pseudogene predicted gene 29216
Cpgi93 1 24615768 to 24616144 376 CpG island CpG island 93
Tssr6110 1 24615894 to 24615913 19 + TSS region transcription start site region 6110
Cpgi94 1 24678269 to 24679298 1029 CpG island CpG island 94
Tssr6111 1 24678352 to 24678381 29 + TSS region transcription start site region 6111
Tssr6112 1 24678433 to 24678460 27 + TSS region transcription start site region 6112
Tssr6113 1 24678536 to 24678609 73 + TSS region transcription start site region 6113
Tssr6114 1 24678613 to 24678627 14 + TSS region transcription start site region 6114
Lmbrd1 1 24678630 to 24766301 87671 + protein coding gene LMBR1 domain containing 1
Tssr6115 1 24678630 to 24678637 7 + TSS region transcription start site region 6115
Tssr6116 1 24678641 to 24678676 35 + TSS region transcription start site region 6116
Tssr6117 1 24678683 to 24678694 11 + TSS region transcription start site region 6117
Tssr6118 1 24678712 to 24678758 46 + TSS region transcription start site region 6118
Tssr6119 1 24678888 to 24678937 49 + TSS region transcription start site region 6119
Tssr11139 1 24679117 to 24679138 21 - TSS region transcription start site region 11139
Tssr6120 1 24685858 to 24685883 25 + TSS region transcription start site region 6120
Tssr6121 1 24733801 to 24733805 4 + TSS region transcription start site region 6121
Tssr6122 1 24753616 to 24753621 5 + TSS region transcription start site region 6122
D1Mit1005 1 24800469 to 24800697 228 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 1005
Tssr6123 1 24864309 to 24864313 4 + TSS region transcription start site region 6123
Gm28594 1 24910461 to 24911659 1198 - pseudogene predicted gene 28594
Tssr11140 1 24943167 to 24943169 2 - TSS region transcription start site region 11140
Gm28237 1 24963209 to 24965158 1949 - lincRNA gene predicted gene 28237
Gm9443 1 25011941 to 25012756 815 + pseudogene predicted gene 9443
Gm29414 1 25026581 to 25027232 651 - lincRNA gene predicted gene 29414
Tssr11141 1 25027261 to 25027271 10 - TSS region transcription start site region 11141
Adgrb3 1 25067476 to 25829707 762231 - protein coding gene adhesion G protein-coupled receptor B3
Tssr11142 1 25094300 to 25094317 17 - TSS region transcription start site region 11142
Tssr11143 1 25165153 to 25165158 5 - TSS region transcription start site region 11143
Gm15702 1 25223730 to 25224173 443 + pseudogene predicted gene 15702
Cpgi95 1 25228579 to 25228951 372 CpG island CpG island 95
Tssr11144 1 25228761 to 25228776 15 - TSS region transcription start site region 11144
Tssr11145 1 25228794 to 25228810 16 - TSS region transcription start site region 11145
Tssr11146 1 25228814 to 25228834 20 - TSS region transcription start site region 11146
Tssr11147 1 25273199 to 25273212 13 - TSS region transcription start site region 11147
Gm20172 1 25276404 to 25277954 1550 - protein coding gene predicted gene, 20172
Gm22260 1 25279445 to 25279551 106 - snRNA gene predicted gene, 22260
Gm37543 1 25284218 to 25285248 1030 - unclassified gene predicted gene, 37543
Gm37331 1 25296512 to 25299886 3374 - unclassified gene predicted gene, 37331
Gm37211 1 25314276 to 25317708 3432 - unclassified gene predicted gene, 37211
Gm37862 1 25325866 to 25328398 2532 - unclassified gene predicted gene, 37862
Gm38286 1 25345978 to 25349082 3104 - unclassified gene predicted gene, 38286
Gm37880 1 25362564 to 25365820 3256 - unclassified gene predicted gene, 37880
D1Dcr47 1 25449875 to 25449971 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 47
Gm25294 1 25451071 to 25451174 103 + snRNA gene predicted gene, 25294
D1Mit363 1 25489978 to 25490119 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 363
D1Mit211 1 25511110 to 25511245 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 211
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1