Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:24200487-24990488

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108
D1Mit520 1 24413293 to 24413428 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-520
Cpgi88 1 24453419 to 24453801 382 CpG island CpG island 88
Gm26418 1 24548841 to 24548977 136 - snoRNA gene predicted gene, 26418
Cpgi89 1 24586289 to 24587566 1277 CpG island CpG island 89
Gm2795 1 24586502 to 24587738 1236 unclassified gene predicted gene 2795
Tssr11135 1 24587413 to 24587425 12 - TSS region transcription start site region 11135
Tssr11136 1 24587433 to 24587448 15 - TSS region transcription start site region 11136
Tubb4b-ps2 1 24594087 to 24595423 1336 - pseudogene tubulin, beta 4B class IVB, pseudogene 2
Cpgi90 1 24595197 to 24595534 337 CpG island CpG island 90
Tssr11137 1 24595487 to 24595488 1 - TSS region transcription start site region 11137
Gm28439 1 24611535 to 24612410 875 - pseudogene predicted gene 28439
Cpgi91 1 24611541 to 24611993 452 CpG island CpG island 91
Tssr6109 1 24612002 to 24612039 37 + TSS region transcription start site region 6109
Cpgi92 1 24612251 to 24615351 3100 CpG island CpG island 92
Gm10222 1 24612407 to 24612700 293 - pseudogene predicted gene 10222
Tssr22 1 24612683 to 24612694 11 + TSS region transcription start site region 22
Gm28438 1 24612775 to 24613119 344 - pseudogene predicted gene 28438
Tssr11138 1 24613116 to 24613119 3 - TSS region transcription start site region 11138
Tssr23 1 24613175 to 24613194 19 + TSS region transcription start site region 23
Gm28437 1 24613189 to 24613971 782 - pseudogene predicted gene 28437
Gm10925 1 24613974 to 24614651 677 - pseudogene predicted gene 10925
Gm28661 1 24614885 to 24615565 680 - pseudogene predicted gene 28661
Gm29216 1 24615706 to 24616197 491 - pseudogene predicted gene 29216
Cpgi93 1 24615768 to 24616144 376 CpG island CpG island 93
Tssr6110 1 24615894 to 24615913 19 + TSS region transcription start site region 6110
Cpgi94 1 24678269 to 24679298 1029 CpG island CpG island 94
Tssr6111 1 24678352 to 24678381 29 + TSS region transcription start site region 6111
Tssr6112 1 24678433 to 24678460 27 + TSS region transcription start site region 6112
Tssr6113 1 24678536 to 24678609 73 + TSS region transcription start site region 6113
Tssr6114 1 24678613 to 24678627 14 + TSS region transcription start site region 6114
Lmbrd1 1 24678630 to 24766301 87671 + protein coding gene LMBR1 domain containing 1
Tssr6115 1 24678630 to 24678637 7 + TSS region transcription start site region 6115
Tssr6116 1 24678641 to 24678676 35 + TSS region transcription start site region 6116
Tssr6117 1 24678683 to 24678694 11 + TSS region transcription start site region 6117
Tssr6118 1 24678712 to 24678758 46 + TSS region transcription start site region 6118
Tssr6119 1 24678888 to 24678937 49 + TSS region transcription start site region 6119
Tssr11139 1 24679117 to 24679138 21 - TSS region transcription start site region 11139
Tssr6120 1 24685858 to 24685883 25 + TSS region transcription start site region 6120
Tssr6121 1 24733801 to 24733805 4 + TSS region transcription start site region 6121
Tssr6122 1 24753616 to 24753621 5 + TSS region transcription start site region 6122
D1Mit1005 1 24800469 to 24800697 228 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 1005
Tssr6123 1 24864309 to 24864313 4 + TSS region transcription start site region 6123
Gm28594 1 24910461 to 24911659 1198 - pseudogene predicted gene 28594
Tssr11140 1 24943167 to 24943169 2 - TSS region transcription start site region 11140
Gm28237 1 24963209 to 24965158 1949 - lincRNA gene predicted gene 28237