Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:23588813-24679150

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28822 1 23574587 to 23596664 22077 + lincRNA gene predicted gene 28822
Cpgi83 1 23761653 to 23763569 1916 CpG island CpG island 83
Tssr6095 1 23761749 to 23761759 10 + TSS region transcription start site region 6095
Tssr6096 1 23761787 to 23761807 20 + TSS region transcription start site region 6096
Tssr6097 1 23761808 to 23761830 22 + TSS region transcription start site region 6097
Tssr6098 1 23761846 to 23761866 20 + TSS region transcription start site region 6098
B3gat2 1 23761926 to 23847865 85939 + protein coding gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
Tssr6099 1 23761976 to 23761999 23 + TSS region transcription start site region 6099
Tssr6100 1 23762003 to 23762018 15 + TSS region transcription start site region 6100
Tssr6101 1 23773259 to 23773263 4 + TSS region transcription start site region 6101
Smap1 1 23844846 to 23922317 77471 - protein coding gene small ArfGAP 1
Tssr11123 1 23877770 to 23877783 13 - TSS region transcription start site region 11123
Tssr11124 1 23891909 to 23891926 17 - TSS region transcription start site region 11124
Tssr11125 1 23909687 to 23909706 19 - TSS region transcription start site region 11125
Tssr11126 1 23909734 to 23909740 6 - TSS region transcription start site region 11126
Cpgi84 1 23921577 to 23922580 1003 CpG island CpG island 84
Tssr11127 1 23922252 to 23922281 29 - TSS region transcription start site region 11127
Tssr11128 1 23922283 to 23922366 83 - TSS region transcription start site region 11128
Tssr11129 1 23922370 to 23922391 21 - TSS region transcription start site region 11129
Tssr11130 1 23922394 to 23922438 44 - TSS region transcription start site region 11130
Sdhaf4 1 23995939 to 24005640 9701 - protein coding gene succinate dehydrogenase complex assembly factor 4
Cpgi85 1 24005264 to 24005869 605 CpG island CpG island 85
Gm26524 1 24005505 to 24005894 389 + lncRNA gene predicted gene, 26524
Tssr11131 1 24005608 to 24005646 38 - TSS region transcription start site region 11131
Fam135a 1 24011093 to 24100341 89248 - protein coding gene family with sequence similarity 135, member A
D1Mit169.2 1 24064924 to 24065033 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169.2
D1Mit169 1 24064967 to 24065107 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169
Lscc1 1 24064967 to 24065107 140 QTL lung squamous cell carcinoma 1
Gm30756 1 24071917 to 24073152 1235 + pseudogene predicted gene, 30756
Cpgi86 1 24099434 to 24100777 1343 CpG island CpG island 86
Tssr11132 1 24099748 to 24099755 7 - TSS region transcription start site region 11132
Tssr6102 1 24100038 to 24100073 35 + TSS region transcription start site region 6102
Tssr11133 1 24100195 to 24100296 101 - TSS region transcription start site region 11133
Tssr11134 1 24100306 to 24100355 49 - TSS region transcription start site region 11134
Gm37580 1 24100625 to 24103424 2799 + unclassified gene predicted gene, 37580
Gm26607 1 24125275 to 24126141 866 + pseudogene predicted gene, 26607
Cpgi87 1 24133813 to 24134150 337 CpG island CpG island 87
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr21 1 24177653 to 24177656 3 + TSS region transcription start site region 21
Tssr6103 1 24177689 to 24177711 22 + TSS region transcription start site region 6103
Tssr6104 1 24195196 to 24195221 25 + TSS region transcription start site region 6104
Tssr6105 1 24195230 to 24195271 41 + TSS region transcription start site region 6105
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108
D1Mit520 1 24413293 to 24413428 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-520
Cpgi88 1 24453419 to 24453801 382 CpG island CpG island 88
Gm26418 1 24548841 to 24548977 136 - snoRNA gene predicted gene, 26418
Cpgi89 1 24586289 to 24587566 1277 CpG island CpG island 89
Gm2795 1 24586502 to 24587738 1236 unclassified gene predicted gene 2795
Tssr11135 1 24587413 to 24587425 12 - TSS region transcription start site region 11135
Tssr11136 1 24587433 to 24587448 15 - TSS region transcription start site region 11136
Tubb4b-ps2 1 24594087 to 24595423 1336 - pseudogene tubulin, beta 4B class IVB, pseudogene 2
Cpgi90 1 24595197 to 24595534 337 CpG island CpG island 90
Tssr11137 1 24595487 to 24595488 1 - TSS region transcription start site region 11137
Gm28439 1 24611535 to 24612410 875 - pseudogene predicted gene 28439
Cpgi91 1 24611541 to 24611993 452 CpG island CpG island 91
Tssr6109 1 24612002 to 24612039 37 + TSS region transcription start site region 6109
Cpgi92 1 24612251 to 24615351 3100 CpG island CpG island 92
Gm10222 1 24612407 to 24612700 293 - pseudogene predicted gene 10222
Tssr22 1 24612683 to 24612694 11 + TSS region transcription start site region 22
Gm28438 1 24612775 to 24613119 344 - pseudogene predicted gene 28438
Tssr11138 1 24613116 to 24613119 3 - TSS region transcription start site region 11138
Tssr23 1 24613175 to 24613194 19 + TSS region transcription start site region 23
Gm28437 1 24613189 to 24613971 782 - pseudogene predicted gene 28437
Gm10925 1 24613974 to 24614651 677 - pseudogene predicted gene 10925
Gm28661 1 24614885 to 24615565 680 - pseudogene predicted gene 28661
Gm29216 1 24615706 to 24616197 491 - pseudogene predicted gene 29216
Cpgi93 1 24615768 to 24616144 376 CpG island CpG island 93
Tssr6110 1 24615894 to 24615913 19 + TSS region transcription start site region 6110
Cpgi94 1 24678269 to 24679298 1029 CpG island CpG island 94
Tssr6111 1 24678352 to 24678381 29 + TSS region transcription start site region 6111
Tssr6112 1 24678433 to 24678460 27 + TSS region transcription start site region 6112
Tssr6113 1 24678536 to 24678609 73 + TSS region transcription start site region 6113
Tssr6114 1 24678613 to 24678627 14 + TSS region transcription start site region 6114
Tssr6115 1 24678630 to 24678637 7 + TSS region transcription start site region 6115
Lmbrd1 1 24678630 to 24766301 87671 + protein coding gene LMBR1 domain containing 1
Tssr6116 1 24678641 to 24678676 35 + TSS region transcription start site region 6116
Tssr6117 1 24678683 to 24678694 11 + TSS region transcription start site region 6117
Tssr6118 1 24678712 to 24678758 46 + TSS region transcription start site region 6118
Tssr6119 1 24678888 to 24678937 49 + TSS region transcription start site region 6119
Tssr11139 1 24679117 to 24679138 21 - TSS region transcription start site region 11139