Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:23269687-24549706

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6087 1 23271674 to 23271705 31 + TSS region transcription start site region 6087
Tssr6088 1 23271754 to 23271765 11 + TSS region transcription start site region 6088
Tssr6089 1 23271806 to 23271816 10 + TSS region transcription start site region 6089
Mir30a 1 23272269 to 23272339 70 + miRNA gene microRNA 30a
Tssr6090 1 23272335 to 23272339 4 + TSS region transcription start site region 6090
Tssr6091 1 23272653 to 23272657 4 + TSS region transcription start site region 6091
Tssr6092 1 23288777 to 23288780 3 + TSS region transcription start site region 6092
Gm27028 1 23291537 to 23291935 398 + lincRNA gene predicted gene, 27028
Mir30c-2 1 23291701 to 23291784 83 + miRNA gene microRNA 30c-2
Tssr6093 1 23291715 to 23291717 2 + TSS region transcription start site region 6093
Tssr6094 1 23291775 to 23291778 3 + TSS region transcription start site region 6094
Gm29107 1 23293729 to 23294075 346 + lincRNA gene predicted gene 29107
Gm20954 1 23345956 to 23346599 643 - pseudogene predicted gene, 20954
Ogfrl1 1 23366424 to 23383210 16786 - protein coding gene opioid growth factor receptor-like 1
Cpgi82 1 23382396 to 23383589 1193 CpG island CpG island 82
Tssr11120 1 23383129 to 23383146 17 - TSS region transcription start site region 11120
Tssr11121 1 23383149 to 23383225 76 - TSS region transcription start site region 11121
Gm19673 1 23391678 to 23399959 8281 - lncRNA gene predicted gene, 19673
Tssr11122 1 23397559 to 23397562 3 - TSS region transcription start site region 11122
Gm7784 1 23479539 to 23480527 988 + pseudogene predicted gene 7784
Gm28822 1 23574587 to 23596664 22077 + lincRNA gene predicted gene 28822
Cpgi83 1 23761653 to 23763569 1916 CpG island CpG island 83
Tssr6095 1 23761749 to 23761759 10 + TSS region transcription start site region 6095
Tssr6096 1 23761787 to 23761807 20 + TSS region transcription start site region 6096
Tssr6097 1 23761808 to 23761830 22 + TSS region transcription start site region 6097
Tssr6098 1 23761846 to 23761866 20 + TSS region transcription start site region 6098
B3gat2 1 23761926 to 23847865 85939 + protein coding gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
Tssr6099 1 23761976 to 23761999 23 + TSS region transcription start site region 6099
Tssr6100 1 23762003 to 23762018 15 + TSS region transcription start site region 6100
Tssr6101 1 23773259 to 23773263 4 + TSS region transcription start site region 6101
Smap1 1 23844846 to 23922317 77471 - protein coding gene small ArfGAP 1
Tssr11123 1 23877770 to 23877783 13 - TSS region transcription start site region 11123
Tssr11124 1 23891909 to 23891926 17 - TSS region transcription start site region 11124
Tssr11125 1 23909687 to 23909706 19 - TSS region transcription start site region 11125
Tssr11126 1 23909734 to 23909740 6 - TSS region transcription start site region 11126
Cpgi84 1 23921577 to 23922580 1003 CpG island CpG island 84
Tssr11127 1 23922252 to 23922281 29 - TSS region transcription start site region 11127
Tssr11128 1 23922283 to 23922366 83 - TSS region transcription start site region 11128
Tssr11129 1 23922370 to 23922391 21 - TSS region transcription start site region 11129
Tssr11130 1 23922394 to 23922438 44 - TSS region transcription start site region 11130
Sdhaf4 1 23995939 to 24005640 9701 - protein coding gene succinate dehydrogenase complex assembly factor 4
Cpgi85 1 24005264 to 24005869 605 CpG island CpG island 85
Gm26524 1 24005505 to 24005894 389 + lncRNA gene predicted gene, 26524
Tssr11131 1 24005608 to 24005646 38 - TSS region transcription start site region 11131
Fam135a 1 24011093 to 24100341 89248 - protein coding gene family with sequence similarity 135, member A
D1Mit169.2 1 24064924 to 24065033 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169.2
D1Mit169 1 24064967 to 24065107 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169
Lscc1 1 24064967 to 24065107 140 QTL lung squamous cell carcinoma 1
Gm30756 1 24071917 to 24073152 1235 + pseudogene predicted gene, 30756
Cpgi86 1 24099434 to 24100777 1343 CpG island CpG island 86
Tssr11132 1 24099748 to 24099755 7 - TSS region transcription start site region 11132
Tssr6102 1 24100038 to 24100073 35 + TSS region transcription start site region 6102
Tssr11133 1 24100195 to 24100296 101 - TSS region transcription start site region 11133
Tssr11134 1 24100306 to 24100355 49 - TSS region transcription start site region 11134
Gm37580 1 24100625 to 24103424 2799 + unclassified gene predicted gene, 37580
Gm26607 1 24125275 to 24126141 866 + pseudogene predicted gene, 26607
Cpgi87 1 24133813 to 24134150 337 CpG island CpG island 87
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr21 1 24177653 to 24177656 3 + TSS region transcription start site region 21
Tssr6103 1 24177689 to 24177711 22 + TSS region transcription start site region 6103
Tssr6104 1 24195196 to 24195221 25 + TSS region transcription start site region 6104
Tssr6105 1 24195230 to 24195271 41 + TSS region transcription start site region 6105
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108
D1Mit520 1 24413293 to 24413428 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-520
Cpgi88 1 24453419 to 24453801 382 CpG island CpG island 88
Gm26418 1 24548841 to 24548977 136 - snoRNA gene predicted gene, 26418