Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:23263616-26243621

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6087 1 23271674 to 23271705 31 + TSS region transcription start site region 6087
Tssr6088 1 23271754 to 23271765 11 + TSS region transcription start site region 6088
Tssr6089 1 23271806 to 23271816 10 + TSS region transcription start site region 6089
Mir30a 1 23272269 to 23272339 70 + miRNA gene microRNA 30a
Tssr6090 1 23272335 to 23272339 4 + TSS region transcription start site region 6090
Tssr6091 1 23272653 to 23272657 4 + TSS region transcription start site region 6091
Tssr6092 1 23288777 to 23288780 3 + TSS region transcription start site region 6092
Gm27028 1 23291537 to 23291935 398 + lincRNA gene predicted gene, 27028
Mir30c-2 1 23291701 to 23291784 83 + miRNA gene microRNA 30c-2
Tssr6093 1 23291715 to 23291717 2 + TSS region transcription start site region 6093
Tssr6094 1 23291775 to 23291778 3 + TSS region transcription start site region 6094
Gm29107 1 23293729 to 23294075 346 + lincRNA gene predicted gene 29107
Gm20954 1 23345956 to 23346599 643 - pseudogene predicted gene, 20954
Ogfrl1 1 23366424 to 23383210 16786 - protein coding gene opioid growth factor receptor-like 1
Cpgi82 1 23382396 to 23383589 1193 CpG island CpG island 82
Tssr11120 1 23383129 to 23383146 17 - TSS region transcription start site region 11120
Tssr11121 1 23383149 to 23383225 76 - TSS region transcription start site region 11121
Gm19673 1 23391678 to 23399959 8281 - lncRNA gene predicted gene, 19673
Tssr11122 1 23397559 to 23397562 3 - TSS region transcription start site region 11122
Gm7784 1 23479539 to 23480527 988 + pseudogene predicted gene 7784
Gm28822 1 23574587 to 23596664 22077 + lincRNA gene predicted gene 28822
Cpgi83 1 23761653 to 23763569 1916 CpG island CpG island 83
Tssr6095 1 23761749 to 23761759 10 + TSS region transcription start site region 6095
Tssr6096 1 23761787 to 23761807 20 + TSS region transcription start site region 6096
Tssr6097 1 23761808 to 23761830 22 + TSS region transcription start site region 6097
Tssr6098 1 23761846 to 23761866 20 + TSS region transcription start site region 6098
B3gat2 1 23761926 to 23847865 85939 + protein coding gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
Tssr6099 1 23761976 to 23761999 23 + TSS region transcription start site region 6099
Tssr6100 1 23762003 to 23762018 15 + TSS region transcription start site region 6100
Tssr6101 1 23773259 to 23773263 4 + TSS region transcription start site region 6101
Smap1 1 23844846 to 23922317 77471 - protein coding gene small ArfGAP 1
Tssr11123 1 23877770 to 23877783 13 - TSS region transcription start site region 11123
Tssr11124 1 23891909 to 23891926 17 - TSS region transcription start site region 11124
Tssr11125 1 23909687 to 23909706 19 - TSS region transcription start site region 11125
Tssr11126 1 23909734 to 23909740 6 - TSS region transcription start site region 11126
Cpgi84 1 23921577 to 23922580 1003 CpG island CpG island 84
Tssr11127 1 23922252 to 23922281 29 - TSS region transcription start site region 11127
Tssr11128 1 23922283 to 23922366 83 - TSS region transcription start site region 11128
Tssr11129 1 23922370 to 23922391 21 - TSS region transcription start site region 11129
Tssr11130 1 23922394 to 23922438 44 - TSS region transcription start site region 11130
Sdhaf4 1 23995939 to 24005640 9701 - protein coding gene succinate dehydrogenase complex assembly factor 4
Cpgi85 1 24005264 to 24005869 605 CpG island CpG island 85
Gm26524 1 24005505 to 24005894 389 + lncRNA gene predicted gene, 26524
Tssr11131 1 24005608 to 24005646 38 - TSS region transcription start site region 11131
Fam135a 1 24011093 to 24100341 89248 - protein coding gene family with sequence similarity 135, member A
D1Mit169.2 1 24064924 to 24065033 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169.2
D1Mit169 1 24064967 to 24065107 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169
Lscc1 1 24064967 to 24065107 140 QTL lung squamous cell carcinoma 1
Gm30756 1 24071917 to 24073152 1235 + pseudogene predicted gene, 30756
Cpgi86 1 24099434 to 24100777 1343 CpG island CpG island 86
Tssr11132 1 24099748 to 24099755 7 - TSS region transcription start site region 11132
Tssr6102 1 24100038 to 24100073 35 + TSS region transcription start site region 6102
Tssr11133 1 24100195 to 24100296 101 - TSS region transcription start site region 11133
Tssr11134 1 24100306 to 24100355 49 - TSS region transcription start site region 11134
Gm37580 1 24100625 to 24103424 2799 + unclassified gene predicted gene, 37580
Gm26607 1 24125275 to 24126141 866 + pseudogene predicted gene, 26607
Cpgi87 1 24133813 to 24134150 337 CpG island CpG island 87
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr21 1 24177653 to 24177656 3 + TSS region transcription start site region 21
Tssr6103 1 24177689 to 24177711 22 + TSS region transcription start site region 6103
Tssr6104 1 24195196 to 24195221 25 + TSS region transcription start site region 6104
Tssr6105 1 24195230 to 24195271 41 + TSS region transcription start site region 6105
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108
D1Mit520 1 24413293 to 24413428 135 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-520
Cpgi88 1 24453419 to 24453801 382 CpG island CpG island 88
Gm26418 1 24548841 to 24548977 136 - snoRNA gene predicted gene, 26418
Cpgi89 1 24586289 to 24587566 1277 CpG island CpG island 89
Gm2795 1 24586502 to 24587738 1236 unclassified gene predicted gene 2795
Tssr11135 1 24587413 to 24587425 12 - TSS region transcription start site region 11135
Tssr11136 1 24587433 to 24587448 15 - TSS region transcription start site region 11136
Tubb4b-ps2 1 24594087 to 24595423 1336 - pseudogene tubulin, beta 4B class IVB, pseudogene 2
Cpgi90 1 24595197 to 24595534 337 CpG island CpG island 90
Tssr11137 1 24595487 to 24595488 1 - TSS region transcription start site region 11137
Gm28439 1 24611535 to 24612410 875 - pseudogene predicted gene 28439
Cpgi91 1 24611541 to 24611993 452 CpG island CpG island 91
Tssr6109 1 24612002 to 24612039 37 + TSS region transcription start site region 6109
Cpgi92 1 24612251 to 24615351 3100 CpG island CpG island 92
Gm10222 1 24612407 to 24612700 293 - pseudogene predicted gene 10222
Tssr22 1 24612683 to 24612694 11 + TSS region transcription start site region 22
Gm28438 1 24612775 to 24613119 344 - pseudogene predicted gene 28438
Tssr11138 1 24613116 to 24613119 3 - TSS region transcription start site region 11138
Tssr23 1 24613175 to 24613194 19 + TSS region transcription start site region 23
Gm28437 1 24613189 to 24613971 782 - pseudogene predicted gene 28437
Gm10925 1 24613974 to 24614651 677 - pseudogene predicted gene 10925
Gm28661 1 24614885 to 24615565 680 - pseudogene predicted gene 28661
Gm29216 1 24615706 to 24616197 491 - pseudogene predicted gene 29216
Cpgi93 1 24615768 to 24616144 376 CpG island CpG island 93
Tssr6110 1 24615894 to 24615913 19 + TSS region transcription start site region 6110
Cpgi94 1 24678269 to 24679298 1029 CpG island CpG island 94
Tssr6111 1 24678352 to 24678381 29 + TSS region transcription start site region 6111
Tssr6112 1 24678433 to 24678460 27 + TSS region transcription start site region 6112
Tssr6113 1 24678536 to 24678609 73 + TSS region transcription start site region 6113
Tssr6114 1 24678613 to 24678627 14 + TSS region transcription start site region 6114
Tssr6115 1 24678630 to 24678637 7 + TSS region transcription start site region 6115
Lmbrd1 1 24678630 to 24766301 87671 + protein coding gene LMBR1 domain containing 1
Tssr6116 1 24678641 to 24678676 35 + TSS region transcription start site region 6116
Tssr6117 1 24678683 to 24678694 11 + TSS region transcription start site region 6117
Tssr6118 1 24678712 to 24678758 46 + TSS region transcription start site region 6118
Tssr6119 1 24678888 to 24678937 49 + TSS region transcription start site region 6119
Tssr11139 1 24679117 to 24679138 21 - TSS region transcription start site region 11139
Tssr6120 1 24685858 to 24685883 25 + TSS region transcription start site region 6120
Tssr6121 1 24733801 to 24733805 4 + TSS region transcription start site region 6121
Tssr6122 1 24753616 to 24753621 5 + TSS region transcription start site region 6122
D1Mit1005 1 24800469 to 24800697 228 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 1005
Tssr6123 1 24864309 to 24864313 4 + TSS region transcription start site region 6123
Gm28594 1 24910461 to 24911659 1198 - pseudogene predicted gene 28594
Tssr11140 1 24943167 to 24943169 2 - TSS region transcription start site region 11140
Gm28237 1 24963209 to 24965158 1949 - lincRNA gene predicted gene 28237
Gm9443 1 25011941 to 25012756 815 + pseudogene predicted gene 9443
Gm29414 1 25026581 to 25027232 651 - lincRNA gene predicted gene 29414
Tssr11141 1 25027261 to 25027271 10 - TSS region transcription start site region 11141
Adgrb3 1 25067476 to 25829707 762231 - protein coding gene adhesion G protein-coupled receptor B3
Tssr11142 1 25094300 to 25094317 17 - TSS region transcription start site region 11142
Tssr11143 1 25165153 to 25165158 5 - TSS region transcription start site region 11143
Gm15702 1 25223730 to 25224173 443 + pseudogene predicted gene 15702
Cpgi95 1 25228579 to 25228951 372 CpG island CpG island 95
Tssr11144 1 25228761 to 25228776 15 - TSS region transcription start site region 11144
Tssr11145 1 25228794 to 25228810 16 - TSS region transcription start site region 11145
Tssr11146 1 25228814 to 25228834 20 - TSS region transcription start site region 11146
Tssr11147 1 25273199 to 25273212 13 - TSS region transcription start site region 11147
Gm20172 1 25276404 to 25277954 1550 - protein coding gene predicted gene, 20172
Gm22260 1 25279445 to 25279551 106 - snRNA gene predicted gene, 22260
Gm37543 1 25284218 to 25285248 1030 - unclassified gene predicted gene, 37543
Gm37331 1 25296512 to 25299886 3374 - unclassified gene predicted gene, 37331
Gm37211 1 25314276 to 25317708 3432 - unclassified gene predicted gene, 37211
Gm37862 1 25325866 to 25328398 2532 - unclassified gene predicted gene, 37862
Gm38286 1 25345978 to 25349082 3104 - unclassified gene predicted gene, 38286
Gm37880 1 25362564 to 25365820 3256 - unclassified gene predicted gene, 37880
D1Dcr47 1 25449875 to 25449971 96 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 47
Gm25294 1 25451071 to 25451174 103 + snRNA gene predicted gene, 25294
D1Mit363 1 25489978 to 25490119 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 363
D1Mit211 1 25511110 to 25511245 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 211
Col4a1m1 1 25511110 to 62907723 37396613 QTL collagen, type IV, alpha 1 modifier 1
Hbnr1 1 25511110 to 58234112 32723002 QTL Heligmosomoides bakeri nematode resistance 1
Gm37011 1 25608250 to 25611184 2934 - unclassified gene predicted gene, 37011
Gm29214 1 25614946 to 25615515 569 - pseudogene predicted gene 29214
Tssr11148 1 25615531 to 25615540 9 - TSS region transcription start site region 11148
Gm37051 1 25620238 to 25623180 2942 - unclassified gene predicted gene, 37051
Gm38260 1 25672245 to 25676239 3994 - unclassified gene predicted gene, 38260
Gm37628 1 25686062 to 25691501 5439 - unclassified gene predicted gene, 37628
Tssr11149 1 25694124 to 25694129 5 - TSS region transcription start site region 11149
Tssr11150 1 25697304 to 25697314 10 - TSS region transcription start site region 11150
8030445P17Rik 1 25722038 to 25724778 2740 - unclassified gene RIKEN cDNA 8030445P17 gene
Gm38198 1 25735389 to 25738969 3580 - unclassified gene predicted gene, 38198
Gm37077 1 25755343 to 25759033 3690 - unclassified gene predicted gene, 37077
Tssr11151 1 25756827 to 25756831 4 - TSS region transcription start site region 11151
Tssr11152 1 25759733 to 25759737 4 - TSS region transcription start site region 11152
Gm37895 1 25775757 to 25780306 4549 - unclassified gene predicted gene, 37895
Tssr11153 1 25781896 to 25781900 4 - TSS region transcription start site region 11153
Gm36952 1 25797281 to 25800905 3624 - unclassified gene predicted gene, 36952
Gm37602 1 25804097 to 25807406 3309 - unclassified gene predicted gene, 37602
2900022M07Rik 1 25808956 to 25809972 1016 - unclassified gene RIKEN cDNA 2900022M07 gene
2900002M20Rik 1 25824390 to 25824719 329 - unclassified gene RIKEN cDNA 2900002M20 gene
Tssr11154 1 25829647 to 25829651 4 - TSS region transcription start site region 11154
Cpgi96 1 25829679 to 25830913 1234 CpG island CpG island 96
Tssr11155 1 25829718 to 25829742 24 - TSS region transcription start site region 11155
Tssr11156 1 25829779 to 25829812 33 - TSS region transcription start site region 11156
Tssr11157 1 25830026 to 25830041 15 - TSS region transcription start site region 11157
Tssr11158 1 25830057 to 25830077 20 - TSS region transcription start site region 11158
Tssr24 1 25830084 to 25830089 5 - TSS region transcription start site region 24
Tssr11159 1 25830090 to 25830189 99 - TSS region transcription start site region 11159
Gm9884 1 25830657 to 25831878 1221 + lncRNA gene predicted gene 9884
Gm39614 1 25879168 to 25892305 13137 + lncRNA gene predicted gene, 39614
Gm31076 1 25896970 to 25903608 6638 - lncRNA gene predicted gene, 31076
Gm19071 1 25993020 to 25994166 1146 - pseudogene predicted gene, 19071
Gm18443 1 25996604 to 25997159 555 - pseudogene predicted gene, 18443
Tssr6124 1 26156267 to 26156272 5 + TSS region transcription start site region 6124