Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:22261265-24251289

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rims1 1 22288422 to 22805724 517302 - protein coding gene regulating synaptic membrane exocytosis 1
D1Ertd228e 1 22307521 to 22307724 203 DNA segment DNA segment, Chr 1, ERATO Doi 228, expressed
Tssr11099 1 22315792 to 22315815 23 - TSS region transcription start site region 11099
Tssr11100 1 22315823 to 22315834 11 - TSS region transcription start site region 11100
Tssr11101 1 22315848 to 22315867 19 - TSS region transcription start site region 11101
Tssr11102 1 22315872 to 22315881 9 - TSS region transcription start site region 11102
Tssr11103 1 22398682 to 22398686 4 - TSS region transcription start site region 11103
Tssr20 1 22469260 to 22469261 1 - TSS region transcription start site region 20
Tssr11104 1 22509350 to 22509372 22 - TSS region transcription start site region 11104
Tssr11105 1 22509375 to 22509397 22 - TSS region transcription start site region 11105
Tssr11106 1 22512491 to 22512513 22 - TSS region transcription start site region 11106
Tssr11107 1 22512516 to 22512559 43 - TSS region transcription start site region 11107
Tssr11108 1 22512572 to 22512579 7 - TSS region transcription start site region 11108
Cpgi78 1 22533056 to 22534254 1198 CpG island CpG island 78
Tssr6084 1 22534122 to 22534123 1 + TSS region transcription start site region 6084
Tssr11109 1 22562534 to 22562535 1 - TSS region transcription start site region 11109
D1Mit1008 1 22669359 to 22669519 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1008
Gm26866 1 22740764 to 22741565 801 + pseudogene predicted gene, 26866
Tssr11110 1 22783488 to 22783503 15 - TSS region transcription start site region 11110
Tssr11111 1 22783510 to 22783535 25 - TSS region transcription start site region 11111
Tssr11112 1 22783543 to 22783567 24 - TSS region transcription start site region 11112
Tssr11113 1 22783621 to 22783635 14 - TSS region transcription start site region 11113
Cpgi79 1 22805250 to 22806596 1346 CpG island CpG island 79
Tssr11114 1 22805903 to 22805914 11 - TSS region transcription start site region 11114
Tssr11115 1 22805994 to 22806007 13 - TSS region transcription start site region 11115
Tssr11116 1 22806043 to 22806102 59 - TSS region transcription start site region 11116
Tssr11117 1 22806147 to 22806166 19 - TSS region transcription start site region 11117
Tssr11118 1 22806237 to 22806272 35 - TSS region transcription start site region 11118
D1Mit431 1 22813824 to 22813925 101 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 431
Gm7759 1 22898387 to 22905081 6694 + unclassified gene predicted gene 7759
Gm7761 1 22984817 to 22986554 1737 - pseudogene predicted gene 7761
D1Mit120 1 23070510 to 23070709 199 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 120
W3q13 1 23070510 to 73937756 50867246 QTL weight 3 weeks QTL 13
4933415F23Rik 1 23100473 to 23102253 1780 - protein coding gene RIKEN cDNA 4933415F23 gene
Cpgi80 1 23101726 to 23102248 522 CpG island CpG island 80
Tssr11119 1 23102243 to 23102266 23 - TSS region transcription start site region 11119
Rn4.5s-ps4 1 23117013 to 23117443 430 pseudogene 4.5s RNA, pseudogene 4
Gm30442 1 23123989 to 23127725 3736 + lncRNA gene predicted gene, 30442
Gm29506 1 23228493 to 23235658 7165 - sense overlapping lncRNA gene predicted gene 29506
Gm24176 1 23245211 to 23245331 120 + snoRNA gene predicted gene, 24176
Gm6420 1 23255685 to 23256407 722 - protein coding gene predicted gene 6420
Cpgi81 1 23255875 to 23257106 1231 CpG island CpG island 81
Tssr6085 1 23256241 to 23256262 21 + TSS region transcription start site region 6085
Tssr6086 1 23256265 to 23256289 24 + TSS region transcription start site region 6086
Tssr6087 1 23271674 to 23271705 31 + TSS region transcription start site region 6087
Tssr6088 1 23271754 to 23271765 11 + TSS region transcription start site region 6088
Tssr6089 1 23271806 to 23271816 10 + TSS region transcription start site region 6089
Mir30a 1 23272269 to 23272339 70 + miRNA gene microRNA 30a
Tssr6090 1 23272335 to 23272339 4 + TSS region transcription start site region 6090
Tssr6091 1 23272653 to 23272657 4 + TSS region transcription start site region 6091
Tssr6092 1 23288777 to 23288780 3 + TSS region transcription start site region 6092
Gm27028 1 23291537 to 23291935 398 + lincRNA gene predicted gene, 27028
Mir30c-2 1 23291701 to 23291784 83 + miRNA gene microRNA 30c-2
Tssr6093 1 23291715 to 23291717 2 + TSS region transcription start site region 6093
Tssr6094 1 23291775 to 23291778 3 + TSS region transcription start site region 6094
Gm29107 1 23293729 to 23294075 346 + lincRNA gene predicted gene 29107
Gm20954 1 23345956 to 23346599 643 - pseudogene predicted gene, 20954
Ogfrl1 1 23366424 to 23383210 16786 - protein coding gene opioid growth factor receptor-like 1
Cpgi82 1 23382396 to 23383589 1193 CpG island CpG island 82
Tssr11120 1 23383129 to 23383146 17 - TSS region transcription start site region 11120
Tssr11121 1 23383149 to 23383225 76 - TSS region transcription start site region 11121
Gm19673 1 23391678 to 23399959 8281 - lncRNA gene predicted gene, 19673
Tssr11122 1 23397559 to 23397562 3 - TSS region transcription start site region 11122
Gm7784 1 23479539 to 23480527 988 + pseudogene predicted gene 7784
Gm28822 1 23574587 to 23596664 22077 + lincRNA gene predicted gene 28822
Cpgi83 1 23761653 to 23763569 1916 CpG island CpG island 83
Tssr6095 1 23761749 to 23761759 10 + TSS region transcription start site region 6095
Tssr6096 1 23761787 to 23761807 20 + TSS region transcription start site region 6096
Tssr6097 1 23761808 to 23761830 22 + TSS region transcription start site region 6097
Tssr6098 1 23761846 to 23761866 20 + TSS region transcription start site region 6098
B3gat2 1 23761926 to 23847865 85939 + protein coding gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
Tssr6099 1 23761976 to 23761999 23 + TSS region transcription start site region 6099
Tssr6100 1 23762003 to 23762018 15 + TSS region transcription start site region 6100
Tssr6101 1 23773259 to 23773263 4 + TSS region transcription start site region 6101
Smap1 1 23844846 to 23922317 77471 - protein coding gene small ArfGAP 1
Tssr11123 1 23877770 to 23877783 13 - TSS region transcription start site region 11123
Tssr11124 1 23891909 to 23891926 17 - TSS region transcription start site region 11124
Tssr11125 1 23909687 to 23909706 19 - TSS region transcription start site region 11125
Tssr11126 1 23909734 to 23909740 6 - TSS region transcription start site region 11126
Cpgi84 1 23921577 to 23922580 1003 CpG island CpG island 84
Tssr11127 1 23922252 to 23922281 29 - TSS region transcription start site region 11127
Tssr11128 1 23922283 to 23922366 83 - TSS region transcription start site region 11128
Tssr11129 1 23922370 to 23922391 21 - TSS region transcription start site region 11129
Tssr11130 1 23922394 to 23922438 44 - TSS region transcription start site region 11130
Sdhaf4 1 23995939 to 24005640 9701 - protein coding gene succinate dehydrogenase complex assembly factor 4
Cpgi85 1 24005264 to 24005869 605 CpG island CpG island 85
Gm26524 1 24005505 to 24005894 389 + lncRNA gene predicted gene, 26524
Tssr11131 1 24005608 to 24005646 38 - TSS region transcription start site region 11131
Fam135a 1 24011093 to 24100341 89248 - protein coding gene family with sequence similarity 135, member A
D1Mit169.2 1 24064924 to 24065033 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169.2
D1Mit169 1 24064967 to 24065107 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169
Lscc1 1 24064967 to 24065107 140 QTL lung squamous cell carcinoma 1
Gm30756 1 24071917 to 24073152 1235 + pseudogene predicted gene, 30756
Cpgi86 1 24099434 to 24100777 1343 CpG island CpG island 86
Tssr11132 1 24099748 to 24099755 7 - TSS region transcription start site region 11132
Tssr6102 1 24100038 to 24100073 35 + TSS region transcription start site region 6102
Tssr11133 1 24100195 to 24100296 101 - TSS region transcription start site region 11133
Tssr11134 1 24100306 to 24100355 49 - TSS region transcription start site region 11134
Gm37580 1 24100625 to 24103424 2799 + unclassified gene predicted gene, 37580
Gm26607 1 24125275 to 24126141 866 + pseudogene predicted gene, 26607
Cpgi87 1 24133813 to 24134150 337 CpG island CpG island 87
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr21 1 24177653 to 24177656 3 + TSS region transcription start site region 21
Tssr6103 1 24177689 to 24177711 22 + TSS region transcription start site region 6103
Tssr6104 1 24195196 to 24195221 25 + TSS region transcription start site region 6104
Tssr6105 1 24195230 to 24195271 41 + TSS region transcription start site region 6105
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107