Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:21213543-24353567

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr6064 1 21218575 to 21218617 42 + TSS region transcription start site region 6064
Tmem14a 1 21218575 to 21230167 11592 + protein coding gene transmembrane protein 14A
Tssr6065 1 21218662 to 21218673 11 + TSS region transcription start site region 6065
Cpgi75 1 21218665 to 21218966 301 CpG island CpG island 75
Tssr6066 1 21218798 to 21218824 26 + TSS region transcription start site region 6066
Tssr6067 1 21218825 to 21218858 33 + TSS region transcription start site region 6067
D1Mit372a 1 21220125 to 21220231 106 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 372a
Gm38224 1 21234722 to 21236821 2099 + unclassified gene predicted gene, 38224
Tssr6068 1 21240581 to 21240588 7 + TSS region transcription start site region 6068
Gsta3 1 21240585 to 21265575 24990 + protein coding gene glutathione S-transferase, alpha 3
Tssr6069 1 21240597 to 21240628 31 + TSS region transcription start site region 6069
Tssr6070 1 21240631 to 21240642 11 + TSS region transcription start site region 6070
Tssr6071 1 21249741 to 21249751 10 + TSS region transcription start site region 6071
Tssr6072 1 21249804 to 21249819 15 + TSS region transcription start site region 6072
Gm28836 1 21250359 to 21271593 21234 - antisense lncRNA gene predicted gene 28836
Tssr11089 1 21256186 to 21256216 30 - TSS region transcription start site region 11089
Tssr11090 1 21256501 to 21256512 11 - TSS region transcription start site region 11090
Tssr6073 1 21256746 to 21256758 12 + TSS region transcription start site region 6073
Tssr6074 1 21257141 to 21257154 13 + TSS region transcription start site region 6074
Tssr6075 1 21262816 to 21262834 18 + TSS region transcription start site region 6075
Tssr6076 1 21262835 to 21262868 33 + TSS region transcription start site region 6076
Tssr6077 1 21262891 to 21262903 12 + TSS region transcription start site region 6077
Tssr6078 1 21264836 to 21264867 31 + TSS region transcription start site region 6078
D1Mit372b 1 21270020 to 21270142 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 372b
Tssr6079 1 21272366 to 21272401 35 + TSS region transcription start site region 6079
Gm7094 1 21272403 to 21272906 503 + pseudogene predicted pseudogene 7094
Gm4956 1 21285246 to 21298312 13066 - pseudogene predicted gene 4956
Tssr11091 1 21291526 to 21291543 17 - TSS region transcription start site region 11091
Tssr11092 1 21291553 to 21291562 9 - TSS region transcription start site region 11092
Tssr6080 1 21291663 to 21291674 11 + TSS region transcription start site region 6080
Tssr11093 1 21291679 to 21291682 3 - TSS region transcription start site region 11093
Tssr11094 1 21298220 to 21298260 40 - TSS region transcription start site region 11094
Tssr11095 1 21299986 to 21300005 19 - TSS region transcription start site region 11095
Gm21909 1 21312517 to 21316320 3803 - pseudogene predicted gene, 21909
Tssr11096 1 21325736 to 21325740 4 - TSS region transcription start site region 11096
Tssr6081 1 21349598 to 21349619 21 + TSS region transcription start site region 6081
Tssr6082 1 21349669 to 21349700 31 + TSS region transcription start site region 6082
Khdc1a 1 21349677 to 21352199 2522 + protein coding gene KH domain containing 1A
Gm16329 1 21354005 to 21355116 1111 + pseudogene predicted gene 16329
Gm16327 1 21364803 to 21365030 227 + pseudogene predicted gene 16327
Tssr6083 1 21368235 to 21368256 21 + TSS region transcription start site region 6083
Khdc1c 1 21368331 to 21369743 1412 + protein coding gene KH domain containing 1C
Gm33147 1 21369788 to 21381308 11520 - lncRNA gene predicted gene, 33147
Gm2709 1 21372670 to 21373764 1094 + pseudogene predicted gene 2709
Gm16533 1 21379555 to 21379782 227 + pseudogene predited gene 16533
Khdc1b 1 21383556 to 21386373 2817 + protein coding gene KH domain containing 1B
Gm16328 1 21390906 to 21391101 195 + pseudogene predicted gene 16328
Kcnq5 1 21398403 to 21961942 563539 - protein coding gene potassium voltage-gated channel, subfamily Q, member 5
D1Mit317 1 21427649 to 21427770 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 317
Gm36949 1 21454691 to 21457017 2326 - unclassified gene predicted gene, 36949
Gm7658 1 21511933 to 21513056 1123 - pseudogene predicted gene 7658
A630064C07Rik 1 21804146 to 21806023 1877 unclassified gene RIKEN cDNA A630064C07 gene
Gm38243 1 21838948 to 21840514 1566 - unclassified gene predicted gene, 38243
Obq23 1 21942441 to 21942441 0 QTL obesity QTL 23
5830474E16Rik 1 21952102 to 21953457 1355 unclassified gene RIKEN cDNA 5830474E16 gene
Gm26580 1 21959842 to 21962530 2688 + lincRNA gene predicted gene, 26580
D1Dcr6 1 21960289 to 21960390 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 6
Cpgi76 1 21960566 to 21962391 1825 CpG island CpG island 76
Tssr11097 1 21961478 to 21961509 31 - TSS region transcription start site region 11097
Tssr11098 1 21962334 to 21962392 58 - TSS region transcription start site region 11098
Gm5696 1 22030064 to 22030615 551 - pseudogene predicted gene 5696
Cpgi77 1 22030410 to 22030588 178 CpG island CpG island 77
D1Dcr7 1 22050596 to 22050691 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 7
D1Dcr8 1 22133369 to 22133467 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 8
Gm28239 1 22237849 to 22238295 446 + pseudogene predicted gene 28239
D1Dcr9 1 22245729 to 22245828 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 9
Rims1 1 22288422 to 22805724 517302 - protein coding gene regulating synaptic membrane exocytosis 1
D1Ertd228e 1 22307521 to 22307724 203 DNA segment DNA segment, Chr 1, ERATO Doi 228, expressed
Tssr11099 1 22315792 to 22315815 23 - TSS region transcription start site region 11099
Tssr11100 1 22315823 to 22315834 11 - TSS region transcription start site region 11100
Tssr11101 1 22315848 to 22315867 19 - TSS region transcription start site region 11101
Tssr11102 1 22315872 to 22315881 9 - TSS region transcription start site region 11102
Tssr11103 1 22398682 to 22398686 4 - TSS region transcription start site region 11103
Tssr20 1 22469260 to 22469261 1 - TSS region transcription start site region 20
Tssr11104 1 22509350 to 22509372 22 - TSS region transcription start site region 11104
Tssr11105 1 22509375 to 22509397 22 - TSS region transcription start site region 11105
Tssr11106 1 22512491 to 22512513 22 - TSS region transcription start site region 11106
Tssr11107 1 22512516 to 22512559 43 - TSS region transcription start site region 11107
Tssr11108 1 22512572 to 22512579 7 - TSS region transcription start site region 11108
Cpgi78 1 22533056 to 22534254 1198 CpG island CpG island 78
Tssr6084 1 22534122 to 22534123 1 + TSS region transcription start site region 6084
Tssr11109 1 22562534 to 22562535 1 - TSS region transcription start site region 11109
D1Mit1008 1 22669359 to 22669519 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1008
Gm26866 1 22740764 to 22741565 801 + pseudogene predicted gene, 26866
Tssr11110 1 22783488 to 22783503 15 - TSS region transcription start site region 11110
Tssr11111 1 22783510 to 22783535 25 - TSS region transcription start site region 11111
Tssr11112 1 22783543 to 22783567 24 - TSS region transcription start site region 11112
Tssr11113 1 22783621 to 22783635 14 - TSS region transcription start site region 11113
Cpgi79 1 22805250 to 22806596 1346 CpG island CpG island 79
Tssr11114 1 22805903 to 22805914 11 - TSS region transcription start site region 11114
Tssr11115 1 22805994 to 22806007 13 - TSS region transcription start site region 11115
Tssr11116 1 22806043 to 22806102 59 - TSS region transcription start site region 11116
Tssr11117 1 22806147 to 22806166 19 - TSS region transcription start site region 11117
Tssr11118 1 22806237 to 22806272 35 - TSS region transcription start site region 11118
D1Mit431 1 22813824 to 22813925 101 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 431
Gm7759 1 22898387 to 22905081 6694 + unclassified gene predicted gene 7759
Gm7761 1 22984817 to 22986554 1737 - pseudogene predicted gene 7761
D1Mit120 1 23070510 to 23070709 199 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 120
W3q13 1 23070510 to 73937756 50867246 QTL weight 3 weeks QTL 13
4933415F23Rik 1 23100473 to 23102253 1780 - protein coding gene RIKEN cDNA 4933415F23 gene
Cpgi80 1 23101726 to 23102248 522 CpG island CpG island 80
Tssr11119 1 23102243 to 23102266 23 - TSS region transcription start site region 11119
Rn4.5s-ps4 1 23117013 to 23117443 430 pseudogene 4.5s RNA, pseudogene 4
Gm30442 1 23123989 to 23127725 3736 + lncRNA gene predicted gene, 30442
Gm29506 1 23228493 to 23235658 7165 - sense overlapping lncRNA gene predicted gene 29506
Gm24176 1 23245211 to 23245331 120 + snoRNA gene predicted gene, 24176
Gm6420 1 23255685 to 23256407 722 - protein coding gene predicted gene 6420
Cpgi81 1 23255875 to 23257106 1231 CpG island CpG island 81
Tssr6085 1 23256241 to 23256262 21 + TSS region transcription start site region 6085
Tssr6086 1 23256265 to 23256289 24 + TSS region transcription start site region 6086
Tssr6087 1 23271674 to 23271705 31 + TSS region transcription start site region 6087
Tssr6088 1 23271754 to 23271765 11 + TSS region transcription start site region 6088
Tssr6089 1 23271806 to 23271816 10 + TSS region transcription start site region 6089
Mir30a 1 23272269 to 23272339 70 + miRNA gene microRNA 30a
Tssr6090 1 23272335 to 23272339 4 + TSS region transcription start site region 6090
Tssr6091 1 23272653 to 23272657 4 + TSS region transcription start site region 6091
Tssr6092 1 23288777 to 23288780 3 + TSS region transcription start site region 6092
Gm27028 1 23291537 to 23291935 398 + lincRNA gene predicted gene, 27028
Mir30c-2 1 23291701 to 23291784 83 + miRNA gene microRNA 30c-2
Tssr6093 1 23291715 to 23291717 2 + TSS region transcription start site region 6093
Tssr6094 1 23291775 to 23291778 3 + TSS region transcription start site region 6094
Gm29107 1 23293729 to 23294075 346 + lincRNA gene predicted gene 29107
Gm20954 1 23345956 to 23346599 643 - pseudogene predicted gene, 20954
Ogfrl1 1 23366424 to 23383210 16786 - protein coding gene opioid growth factor receptor-like 1
Cpgi82 1 23382396 to 23383589 1193 CpG island CpG island 82
Tssr11120 1 23383129 to 23383146 17 - TSS region transcription start site region 11120
Tssr11121 1 23383149 to 23383225 76 - TSS region transcription start site region 11121
Gm19673 1 23391678 to 23399959 8281 - lncRNA gene predicted gene, 19673
Tssr11122 1 23397559 to 23397562 3 - TSS region transcription start site region 11122
Gm7784 1 23479539 to 23480527 988 + pseudogene predicted gene 7784
Gm28822 1 23574587 to 23596664 22077 + lincRNA gene predicted gene 28822
Cpgi83 1 23761653 to 23763569 1916 CpG island CpG island 83
Tssr6095 1 23761749 to 23761759 10 + TSS region transcription start site region 6095
Tssr6096 1 23761787 to 23761807 20 + TSS region transcription start site region 6096
Tssr6097 1 23761808 to 23761830 22 + TSS region transcription start site region 6097
Tssr6098 1 23761846 to 23761866 20 + TSS region transcription start site region 6098
B3gat2 1 23761926 to 23847865 85939 + protein coding gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
Tssr6099 1 23761976 to 23761999 23 + TSS region transcription start site region 6099
Tssr6100 1 23762003 to 23762018 15 + TSS region transcription start site region 6100
Tssr6101 1 23773259 to 23773263 4 + TSS region transcription start site region 6101
Smap1 1 23844846 to 23922317 77471 - protein coding gene small ArfGAP 1
Tssr11123 1 23877770 to 23877783 13 - TSS region transcription start site region 11123
Tssr11124 1 23891909 to 23891926 17 - TSS region transcription start site region 11124
Tssr11125 1 23909687 to 23909706 19 - TSS region transcription start site region 11125
Tssr11126 1 23909734 to 23909740 6 - TSS region transcription start site region 11126
Cpgi84 1 23921577 to 23922580 1003 CpG island CpG island 84
Tssr11127 1 23922252 to 23922281 29 - TSS region transcription start site region 11127
Tssr11128 1 23922283 to 23922366 83 - TSS region transcription start site region 11128
Tssr11129 1 23922370 to 23922391 21 - TSS region transcription start site region 11129
Tssr11130 1 23922394 to 23922438 44 - TSS region transcription start site region 11130
Sdhaf4 1 23995939 to 24005640 9701 - protein coding gene succinate dehydrogenase complex assembly factor 4
Cpgi85 1 24005264 to 24005869 605 CpG island CpG island 85
Gm26524 1 24005505 to 24005894 389 + lncRNA gene predicted gene, 26524
Tssr11131 1 24005608 to 24005646 38 - TSS region transcription start site region 11131
Fam135a 1 24011093 to 24100341 89248 - protein coding gene family with sequence similarity 135, member A
D1Mit169.2 1 24064924 to 24065033 109 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169.2
D1Mit169 1 24064967 to 24065107 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 169
Lscc1 1 24064967 to 24065107 140 QTL lung squamous cell carcinoma 1
Gm30756 1 24071917 to 24073152 1235 + pseudogene predicted gene, 30756
Cpgi86 1 24099434 to 24100777 1343 CpG island CpG island 86
Tssr11132 1 24099748 to 24099755 7 - TSS region transcription start site region 11132
Tssr6102 1 24100038 to 24100073 35 + TSS region transcription start site region 6102
Tssr11133 1 24100195 to 24100296 101 - TSS region transcription start site region 11133
Tssr11134 1 24100306 to 24100355 49 - TSS region transcription start site region 11134
Gm37580 1 24100625 to 24103424 2799 + unclassified gene predicted gene, 37580
Gm26607 1 24125275 to 24126141 866 + pseudogene predicted gene, 26607
Cpgi87 1 24133813 to 24134150 337 CpG island CpG island 87
Col9a1 1 24177610 to 24252684 75074 + protein coding gene collagen, type IX, alpha 1
Tssr21 1 24177653 to 24177656 3 + TSS region transcription start site region 21
Tssr6103 1 24177689 to 24177711 22 + TSS region transcription start site region 6103
Tssr6104 1 24195196 to 24195221 25 + TSS region transcription start site region 6104
Tssr6105 1 24195230 to 24195271 41 + TSS region transcription start site region 6105
Tssr6106 1 24210374 to 24210387 13 + TSS region transcription start site region 6106
Tssr6107 1 24230807 to 24230830 23 + TSS region transcription start site region 6107
Col19a1 1 24261890 to 24587472 325582 - protein coding gene collagen, type XIX, alpha 1
D1Mit432 1 24332803 to 24332898 95 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 432
Tssr6108 1 24338532 to 24338539 7 + TSS region transcription start site region 6108